SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14793

Length: 1158 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14793

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	arp2/3 complex 20 kD subunit, putative	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	actin-related protein 2 3 complex subunit expressed	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	cell morphogenesis	GO:0000902	Biological Process	93%
Blast2go	actin nucleation	GO:0045010	Biological Process	93%
Blast2go	actin filament polymerization	GO:0030041	Biological Process	93%
Blast2go	protein binding	GO:0005515	Molecular Function	93%
Blast2go	Arp2/3 protein complex	GO:0005885	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ARP23 complex 20kDa subunit	IPR008384	-	0.0	93%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
319		88		11	0.923564
662		12		87	0.999964
718		75		25	1.0
756	25		75		1.0
773		25	75		1.0
782		81		18	1.0
803		78		21	1.0
808	35		64		1.0
844	12		87		0.992554
852	83		16		0.994512
874	16		83		0.994512
878	33			66	1.0
953	90	10			0.90298
960	10		90		0.90298
997	10			90	0.90298
1006	40	60			1.0
1015		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain