SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14790

Length: 1536 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mtn21-like protein n=3 Tax=Populus trichocarpa RepID=A9PAE8_POPTR	-	-	65%
FL-Next	sp=Auxin-induced protein 5NG4; Pinus taeda (Loblolly pine).	-	-	57%
Blast2go	nodulin-like protein 5ng4	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	78%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	78%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	cell cortex	GO:0005938	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q6J163

Fln msg: Overlapping hits, possible frame ERROR between 468 and 347,

Fln protein: MADMVSRCVVPERVKLHAAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPITKLWLGSLNSGSLNPELYDVEPLETKTENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGIIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLYFVLWGKSEEKRLNLLTKAIMAPQAQSSSTVDEEEASASPITVSSNDNDNSSTAKQFSNLTQPLLHGLKRNATASASDATDKP*

Protein Length: 416

Fln nts: AAAGCAAGTGGTATCAACGCAGGGTAATGGGGGTGGCTCTCTCTGTCTGTGTCTGTGTCTCTGAGATTCTCAGATTGATTCAATCTTTCTGGTACTCTTGTTCTTTCAAGCATATACACATAATATCTGTGTATTGATTCTTTGGCTTAATGCGCT_-_ATGGCCGACATGGTGAGCAGATGTGTGGTGCCAGAGAGAGTGAAACTGCATGCTGCCATGCTGGCACTGCAATTTGGCTATGCCGGATTTCATATTGTGTCCAGAGCTGCGCTTAACATGGGAATCAGCAAGATCGTCTTCCCAATTTACAGAAACATCATTGCGTTGCTGCTGCTTGGTCCTGCTGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTCCCACATTTGCGTCTGCCATACAGAACTCTGTGCCTGCTATCACCTTTATCATGGCGGCAATTCTGGGGCTGGAAGAAGTCCACATAAGAAGACTAGATGGATTGGCCAAGATAGTTGGTACTGTAGCCTGCGTTGGGGGTGCTACGATTATAACTCTTTACAAAGGTCCCCCGATTACCAAATTATGGTTGGGAAGCCTCAACTCTGGTTCTTTGAATCCAGAGTTATATGATGTTGAACCCCTTGAAACGAAGACTGAGAACTGGACACTGGGTTGTATTTATCTCCTCGGAAACTGCCTAGCTTGGTCTGGCTGGATAGTCATTCAGGCGCCGGTGCTGAAGAAATACCCTGCACGCCTTTCTGTGACATCATTCACATGCCTCTTCGGCATTATTCAATTCCTGGCGATTGCAGCTTTCTTTGAAAGGGATCCGAGTCACTGGAAGATGCACTCTGGGGGAGAACTCTTCACCGTTCTATACGCGGGAATAGTGGCTTCTGGCATTGCCTTCTCAGTCCAGATATGGTGTATTGATAGAGGAGGGCCTGTGTTCGTTGCAGTGTACCAACCTGTTCAGACTATAGCCGTAGCAGTTATGGCATCCATTATTCTAGGAGAGCAATTTTACCTGGGAGGAATAATCGGAGCGATTCTCATAATAGCAGGTCTGTACTTCGTACTGTGGGGGAAGAGCGAGGAAAAGAGACTGAACTTGCTGACCAAGGCAATCATGGCTCCACAGGCTCAAAGCAGCAGCACTGTAGATGAAGAGGAAGCATCCGCATCGCCCATAACTGTGAGCAGCAACGACAACGACAACAGCAGCACAGCCAAGCAATTCAGTAACCTTACACAGCCTCTTCTCCATGGGCTGAAGCGGAACGCCACCGCTTCTGCCTCTGATGCCACTGATAAACCCTAG___ATTTTGACATCATTTAATTCCCTTGTGATTAGAACTCTACATATATATATTTTGCTCGATACTGCGTGCGAGTTTTTGTGAAACTTTTGGTTATGACTATAGAATTACATCAATATATTTCTTTATTGTTTGCAAAA

Fln Alignment:

sp_v1.1_unigene14790___ADMVSRCVV--PERVKLHAAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIXXXXXXXXXXFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPITKLWXXXXXXXXXXPELYDVEPLETKTENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGIIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFYXXXXXXXXXXXXXXYFVLWGKSEEKRLNLL-TKAIMAPQAQSSSTVDEEEASASPITVXXXXXXXXXTAKQFSNLTQPLL
Q6J163_______________SNIMQRCNVFMSERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQP----DNMDQSAT-LIINSSNGIKPNTS---SSLTQPLL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
903	90			10	0.90298
904	90		10		0.90298
1315	14	85			1.0
1480		10		90	0.90298
1497	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain