SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14783

Length: 1170 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14783

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to putative serine/threonine kinase	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	serine threonine kinase	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	kinase activity	GO:0016301	Molecular Function	78%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	78%
Blast2go	EF-hand-like domain	IPR011992	-	78%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	78%
Blast2go	EF-hand	IPR018248	-	78%
Blast2go	EF-HAND 2	IPR018249	-	78%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
683	2		97		0.967801
744		95		4	0.997494
746		95		4	0.997494
776		94		5	0.998578
837			93	6	0.999153
991	16		83		0.994512
992	16			83	0.994512
994		83		16	0.994512
1127	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain