SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14779

Length: 2279 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14779
CGTGGATTGCGAGAAAGTGGTATAGGAAATTTGGAAGAGAGCGAGAGGTAGGTGCTTATCCTTGTATTGCGTCATGACAAATCATACGCAGTGACATTGCCTGACACTCGTGTTGGTCTTCGAAGTCGGCCCAGTCCTCCTTCCCCTACCTACTCCAGACGTGACCTCCAAAACTCCCACGTATGGATTTTCGCATTATACATAGCCAATCTACCTCCTCCTTCATGGGGAAGCCATTGTTCCGCAGGGAAATGTCTGTTCCTGAAATGGGTCCGTTTGGAGTTGTGGTGAGTGGTATTGTGGCCATTGCCATAGTTTACAAGTTGGTGCAATTGTGGAGATTCAAGCTGCCACCAGGTCCCAGACCATGGCCTGTGGTGGGGAATCTGCTGCAGATAGAACCTGTGAGATTTAGATGCTTCTGGGACTGGTCCAAGAAATATGGGCCAATCATGTCTGTGTGGTTTGGATCCACACTCAATGTAGTTGTGTCCAACACAGAGCTGGCTAAGGAGGTTCTCAAGGAGCACGATCAACAGCTTGCCGACAGGCCCAGATCCAGATCGGCTGAGAAATTTAGCAGAAATGGCCAAGACTTGATTTGGGCTGACTATGGTCCTCATTATGTGAAGGTTAGGAAGGTCTGTACTCTGGAGCTCTTCTCTCCCAAGAGATTGGAGGCCCTCAGGCCTATCAGAGAAGACGAGGTTGCAGCCATGGTAGAATCCATATTCAATGACTGTGGCAAACAAGAAGGAATCGGCAAGCCCTTGGTGGTGAAGAAATATCTGTCAGGTGTGGCATTCAACAATATCACCAGGCTTGCTTTTGGGAAAAGATTTGTGAATGAAGAAGGGAAGATGGATCCACAAGGTGTGGAGTTTAAGGAAATTGTTGCAACAGGGTTGAAGCTGGGGGCTTCCCTCACCATGGCCGAGCACATTCCCTATCTCCGCTGGATGTTTCCATTGGAAGAGGGTGCGTTCGCCAAGCATGGTGCAAGGAGAGACAATGTCACCAAAGCTATCATGGAAGAGCATACACTTGCCAGGCAGACGAGTGGTGCCAAACAACATTTTGTGGATGCATTGCTCACCCTACAAGAAAAATATGATCTTAGTGAGGATACTATTATTGGCCTCCTCTGGGATATGATCACAGCAGGTATGGATACAACAGCAATAACTGTAGAATGGGCCATGGCTGAACTTGTTCGCAATCCCCGAATTCAACAGAAAGCACAGGAAGAGATAGACAGAGTGGTTGGCAGGGACAGAGTGATGAATGAGACTGATTTTCCTCATCTACCATACCTGCAATGCATCACAAAAGAGGCTCTCCGCTTGCATCCACCCACTCCTCTGATGCTTCCACATAAAGCAACACAGAATGTCAAGATAGGTGGCTATGATATACCCAAAGGATCCAATGTACATGTAAATGTGTGGGCCATTGCTCGGGATCCGGCTGTATGGAAGGACCCAGTGACCTTCAGGCCTGAGAGATTTCTTGAGGAAGATGTTGATATTAAGGGCCATGATTATAGACTACTGCCATTTGGTGCAGGGCGCAGGATCTGTCCTGGTGCACAATTGGGTATTAATTTAGTTCAGTCTATGTTGGGACACCTGCTTCATCATTTCGTATGGGCACCTCCTGAGGGAATGAAGGCAGAAGACATAGATCTCACAGAGAATCCAGGGCTTGTTACTTTCATGGCCAAGCCTGTGCAGGCCATTGCTATTCCTCGATTGCCTGATCATCTCTACAAGCGACAACCACTCAATTGATCTGATAGTGAGTTTGAATTTTGTTTTGATACAAAACGAAATAACGTGCAGTTTCTCCTTTTCCATGGTCAACATGCAGCTTTCTTTCTCTGAAGCCCAGCTTCTAGCAAGCAATAACTGTATATTTTAGAACAAATACCTATTCCTCAAATTGAGTATTTCTCTGTAAGCGATGTTACTTGTGCAATTTGGCAAGATATAGTAAAGTTTACTCTAGTGTATTTTACTAGTCTTATGTAACATGCGGAACTGATAGATTGCATTCAGAAAGCCTCAATAGATGTTGGTGCTTGATAGGTTTTTTAACAAGGGAACTTGCTGGTCTTAAAACGCTGAATGTATTATTGAGGTCTGAAACATTTGCCTTGCACAATGTAGACTGAAGTCGCTTCAATAATATTTTCCCTGGTATATTGATTTATACTATGAAGTTAGGTTATGTGAAAAGTTGGCTTTTGTATTTTGACTCTCATCTACGGGTCTGTAGGC

Ace file of the UniGene sp_v1.1_unigene14779 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P-coumarate 3-hydroxylase n=2 Tax=Pinaceae RepID=Q8VZH6_PINTA	-	-	96%
FL-Next	tr=P-coumarate 3-hydroxylase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	cytochrome p450	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Flavonoid 3'-monooxygenase.	EC:1.14.13.21	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	89%
Blast2go	Flavone and flavonol biosynthesis	00944	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	heme binding	GO:0020037	Molecular Function	89%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	89%
Blast2go	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	89%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	89%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8VZH6

Fln msg:

Fln protein: MDFRIIHSQSTSSFMGKPLFRREMSVPEMGPFGVVVSGIVAIAIVYKLVQLWRFKLPPGPRPWPVVGNLLQIEPVRFRCFWDWSKKYGPIMSVWFGSTLNVVVSNTELAKEVLKEHDQQLADRPRSRSAEKFSRNGQDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVAAMVESIFNDCGKQEGIGKPLVVKKYLSGVAFNNITRLAFGKRFVNEEGKMDPQGVEFKEIVATGLKLGASLTMAEHIPYLRWMFPLEEGAFAKHGARRDNVTKAIMEEHTLARQTSGAKQHFVDALLTLQEKYDLSEDTIIGLLWDMITAGMDTTAITVEWAMAELVRNPRIQQKAQEEIDRVVGRDRVMNETDFPHLPYLQCITKEALRLHPPTPLMLPHKATQNVKIGGYDIPKGSNVHVNVWAIARDPAVWKDPVTFRPERFLEEDVDIKGHDYRLLPFGAGRRICPGAQLGINLVQSMLGHLLHHFVWAPPEGMKAEDIDLTENPGLVTFMAKPVQAIAIPRLPDHLYKRQPLN*

Protein Length: 537

Fln nts: CGTGGATTGCGAGAAAGTGGTATAGGAAATTTGGAAGAGAGCGAGAGGTAGGTGCTTATCCTTGTATTGCGTCATGACAAATCATACGCAGTGACATTGCCTGACACTCGTGTTGGTCTTCGAAGTCGGCCCAGTCCTCCTTCCCCTACCTACTCCAGACGTGACCTCCAAAACTCCCACGT_-_ATGGATTTTCGCATTATACATAGCCAATCTACCTCCTCCTTCATGGGGAAGCCATTGTTCCGCAGGGAAATGTCTGTTCCTGAAATGGGTCCGTTTGGAGTTGTGGTGAGTGGTATTGTGGCCATTGCCATAGTTTACAAGTTGGTGCAATTGTGGAGATTCAAGCTGCCACCAGGTCCCAGACCATGGCCTGTGGTGGGGAATCTGCTGCAGATAGAACCTGTGAGATTTAGATGCTTCTGGGACTGGTCCAAGAAATATGGGCCAATCATGTCTGTGTGGTTTGGATCCACACTCAATGTAGTTGTGTCCAACACAGAGCTGGCTAAGGAGGTTCTCAAGGAGCACGATCAACAGCTTGCCGACAGGCCCAGATCCAGATCGGCTGAGAAATTTAGCAGAAATGGCCAAGACTTGATTTGGGCTGACTATGGTCCTCATTATGTGAAGGTTAGGAAGGTCTGTACTCTGGAGCTCTTCTCTCCCAAGAGATTGGAGGCCCTCAGGCCTATCAGAGAAGACGAGGTTGCAGCCATGGTAGAATCCATATTCAATGACTGTGGCAAACAAGAAGGAATCGGCAAGCCCTTGGTGGTGAAGAAATATCTGTCAGGTGTGGCATTCAACAATATCACCAGGCTTGCTTTTGGGAAAAGATTTGTGAATGAAGAAGGGAAGATGGATCCACAAGGTGTGGAGTTTAAGGAAATTGTTGCAACAGGGTTGAAGCTGGGGGCTTCCCTCACCATGGCCGAGCACATTCCCTATCTCCGCTGGATGTTTCCATTGGAAGAGGGTGCGTTCGCCAAGCATGGTGCAAGGAGAGACAATGTCACCAAAGCTATCATGGAAGAGCATACACTTGCCAGGCAGACGAGTGGTGCCAAACAACATTTTGTGGATGCATTGCTCACCCTACAAGAAAAATATGATCTTAGTGAGGATACTATTATTGGCCTCCTCTGGGATATGATCACAGCAGGTATGGATACAACAGCAATAACTGTAGAATGGGCCATGGCTGAACTTGTTCGCAATCCCCGAATTCAACAGAAAGCACAGGAAGAGATAGACAGAGTGGTTGGCAGGGACAGAGTGATGAATGAGACTGATTTTCCTCATCTACCATACCTGCAATGCATCACAAAAGAGGCTCTCCGCTTGCATCCACCCACTCCTCTGATGCTTCCACATAAAGCAACACAGAATGTCAAGATAGGTGGCTATGATATACCCAAAGGATCCAATGTACATGTAAATGTGTGGGCCATTGCTCGGGATCCGGCTGTATGGAAGGACCCAGTGACCTTCAGGCCTGAGAGATTTCTTGAGGAAGATGTTGATATTAAGGGCCATGATTATAGACTACTGCCATTTGGTGCAGGGCGCAGGATCTGTCCTGGTGCACAATTGGGTATTAATTTAGTTCAGTCTATGTTGGGACACCTGCTTCATCATTTCGTATGGGCACCTCCTGAGGGAATGAAGGCAGAAGACATAGATCTCACAGAGAATCCAGGGCTTGTTACTTTCATGGCCAAGCCTGTGCAGGCCATTGCTATTCCTCGATTGCCTGATCATCTCTACAAGCGACAACCACTCAATTGA___TCTGATAGTGAGTTTGAATTTTGTTTTGATACAAAACGAAATAACGTGCAGTTTCTCCTTTTCCATGGTCAACATGCAGCTTTCTTTCTCTGAAGCCCAGCTTCTAGCAAGCAATAACTGTATATTTTAGAACAAATACCTATTCCTCAAATTGAGTATTTCTCTGTAAGCGATGTTACTTGTGCAATTTGGCAAGATATAGTAAAGTTTACTCTAGTGTATTTTACTAGTCTTATGTAACATGCGGAACTGATAGATTGCATTCAGAAAGCCTCAATAGATGTTGGTGCTTGATAGGTTTTTTAACAAGGGAACTTGCTGGTCTTAAAACGCTGAATGTATTATTGAGGTCTGAAACATTTGCCTTGCACAATGTAGACTGAAGTCGCTTCAATAATATTTTCCCTGGTATATTGATTTATACTATGAAGTTAGGTTATGTGAAAAGTTGGCTTTTGTATTTTGACTCTCATCTACGGGTCTGTAGGC

Fln Alignment:

sp_v1.1_unigene14779___MSVPEMGPFXXXXXXXXXXXXVYKLVQLWRFKLPPGPRPWPVVGNLLQIEPVRFRCFWDWSKKYGPIMSVWFGSTLNVVVSNTELAKEVLKEHDQQLADRPRSRSAEKFSRNGQDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVAAMVESIFNDCGKQEGIGKPLVVKKYLSGVAFNNITRLAFGKRFVNEEGKMDPQGVEFKEIVATGLKLGASLTMAEHIPYLRWMFPLEEGAFAKHGARRDNVTKAIMEEHTLARQTSGAKQHFVDALLTLQEKYDLSEDTIIGLLWDMITAGMDTTAITVEWAMAELVRNPRIQQKAQEEIDRVVGRDRVMNETDFPHLPYLQCITKEALRLHPPTPLMLPHKATQNVKIGGYDIPKGSNVHVNVWAIARDPAVWKDPVTFRPERFLEEDVDIKGHDYRLLPFGAGRRICPGAQLGINLVQSMLGHLLHHFVWAPPEGMKAEDIDLTENPGLVTFMAKPVQAIAIPRLPDHLYKRQPLN
Q8VZH6_______________MSVPEMGPFGVVVTGIVAIAIVYKLVQRWRFKLPPGPRPWPVVGNLLQIEPVRFRCFWDWSKKYGPIMSVWFGSTLNVVVSNTELAKEVLKEHDQQLADRPRSRSAEKFSRNGQDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVAAMVESIFNDCGKQEGIGKPLVVKRYLSGVAFNNITRPAFGKRFVNEEGKMDPQGVEFKEIVATGLKLGASLTMAEHIPYLRWMFPLEEGAFAKHGARRDNVTKAIMEEHTLARQTSGAKQHFVDALLTLQEKYDLSEDTIIGLLWDMITAGMDTTAITVEWAMAELVRNPRIQQKAQEEIDRVVGRDRVMNETDFPHLPYLQCITKEALRLHPPTPLMLPHKATQNVKIGGYDIPKGSNVHVNVWAIARDPAVWKDPVTFRPERFLEEDVDIKGHDYRLLPFGAGRRICPGAQLGINLVQSMLGHLLHHFVWAPPEGMQAEDIDLTENPGLVTFMAKPVQAIAIPRLPDHLYKRQPLN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1486		10		90	0.90298
1951		94	5		0.998397
1954	5	94			0.998397
1955	94		5		0.998397
1956	94	5			0.998397
1958	5			94	0.998397
1959	5			94	0.998578
1961			5	94	0.998578
1962	91			5	0.99441
1963	94	5			0.998578
1966			5	94	0.998744
1968		5		94	0.998744
2050		58	16		1.0
2051		75	25		1.0
2052		75	25		1.0
2053	8	66	8	16	0.999991
2054	75			8	0.99999
2058	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain