SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14774

Length: 1394 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14774 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Picea sitchensis RepID=A9NNU8_PICSI	-	-	78%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	nonspecific lipid-transfer protein a	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	0.0	70%
Blast2go	lipid binding	GO:0008289	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	70%
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	70%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	70%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNU8

Fln msg:

Fln protein: MGKNAWGFALVAVFMAVGAVAQAPSPSSSSSSDCTSAITSLSPCLSFVTTNSNETKPGNDCCTALSSIVSTKVLCLCQVLSGNNNLGLPINRTKALALPGACNVKTPPISQCAAAGAPLTSFGVPVSSPALSPQTSKVPAKAPAASTPAPTKATPTPTSATPAAAPVLAPATTVSPPLPAPTPSPSGSPTVSSPPAGSPQSVSSSPSGEGPATSSGPAAGSPGGSAAAPGSSTSGSTATAIFTPSTLLVLVGVALAGVQW*

Protein Length: 262

Fln nts: TGCTATTCCCCTGGCATATCAGAGTGCATTAACTTTTCTATAGGATAAGAAATAAGAGTTGCCCCATTTAAAGAACCTGCCTCGGGCATACTGTGTATACGGTAACAGGCGAGTCTTCTCTTGTTTCAGTCTGTTTTCTGTATTGTAAACTTATACTGCTATCAGGCCACAACTTTGAGCTTAAGCGGTGTTTTTTTGGGGTCTGTAGGGGTTTTTGCTTTAGG_-_ATGGGGAAGAACGCGTGGGGTTTTGCTTTAGTGGCTGTCTTTATGGCAGTTGGAGCGGTGGCACAGGCGCCTTCTCCTTCTTCTTCGTCTTCTTCAGATTGTACCAGCGCTATAACCAGCTTGTCTCCATGTTTAAGCTTTGTTACGACTAACAGCAACGAAACGAAGCCGGGCAATGATTGTTGTACCGCGCTCTCTTCAATTGTTTCTACTAAGGTGCTCTGCCTCTGCCAAGTTCTATCTGGTAATAACAACCTGGGGCTGCCTATCAATCGCACAAAGGCCTTGGCTCTTCCTGGGGCCTGCAATGTCAAAACGCCGCCCATAAGCCAATGCGCAGCTGCCGGAGCTCCTTTAACATCCTTCGGGGTTCCAGTTTCTTCTCCAGCGTTGTCACCGCAAACTTCAAAGGTACCGGCTAAAGCTCCTGCGGCTTCAACCCCGGCACCAACAAAGGCAACACCGACTCCAACATCTGCTACACCAGCGGCCGCACCGGTGCTTGCACCCGCGACAACGGTTTCGCCGCCTCTACCCGCTCCTACGCCGAGTCCTTCAGGGTCTCCAACCGTATCGAGCCCACCAGCCGGGTCACCACAATCCGTTTCAAGCAGCCCTTCCGGGGAAGGGCCGGCTACCAGCAGCGGCCCGGCTGCTGGGTCCCCCGGAGGAAGCGCGGCGGCCCCCGGATCAAGTACGTCAGGGAGCACAGCCACGGCGATTTTCACGCCATCCACTCTCCTCGTTTTGGTGGGAGTGGCTCTTGCTGGTGTTCAGTGGTGA___GAATGTCAGCAACCACTGCCGCTCCACTAATTTTAGTGGGGGGAATATGCTTATCTGTGTCGGAAGATCTTGTGCGGGTGGCCCTGCATTTTATTCTCCGAGTCGTAGTTTTTGTCTGTCATAGCTTTCTAGGTAGAGCAGGATTATGCATTATTCGGCGGATTCTTTCATTATTATACTATTATGACGATTCATTTCTATTTTCTTACTCTGTATATCAAAATATATCTCCGCCACCGTAAATGTTTTCTCGTATCTGAATGAATAAAATGGTCGATTGTTTTAATTCCCCTCGTGGGATTTTCAAATTTTTCGACATTAAATCAGTAATTGAAAATGACCGATTGTCAGTGGATTGATTTTCAAAATTTTCGACATTAAATCAGT

Fln Alignment:

sp_v1.1_unigene14774___KNAWGFALVAVFMAVGAVAQAPXXXXXXXXXXXXXXXXXSPCLSFVTTNSNETKPGNDCCTALSSIVSTKVLCLCQVLSGNNNLGLPINRTKALALPGACNVKTPPISQCAAAGAPLTSFGVPVSSPALSP
A9NNU8_______________KNAWGLALMAVFMAVGVVAQAPSPSSSSSSDCTSAITSLSPCLSFVMTSSNETKPGNDCCTALSAIVSTKVLCLCQVLSGNNNLGLPINRTKALALPGACNVKTPPISQCAAAGSPLASLGAPVSSPASSP

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
577			88	11	0.923564
1101	1		95	3	0.904136
1103	3	96			0.986325
1105		96		3	0.986325
1106	1	95	3		0.911382
1107	4			95	0.99999
1108		3	96		0.98536
1115	5	93	1		0.999965
1117		95	3		0.918242
1121	96		3		0.988113
1124		1		94	0.924724
1157		50		50	1.0
1188		93		6	0.999453
1189			6	93	0.999453
1191		92	7		0.999532
1192	92			7	0.999532
1196		90	10		0.999898
1201	89		10		0.999919
1202	89		10		0.999919
1203	89			10	0.999919
1204	89	10			0.999919
1207	72		13	13	1.0
1208	13	72	13		1.0
1209	13	86			1.0
1213			15	84	1.0
1223	84		15		1.0
1226		21		78	1.0
1227	21		78		1.0
1228	5	15		78	1.0
1230	15		84		1.0
1232	5	78	15		1.0
1233	13	6		80	0.999961

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain