SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14771

Length: 2198 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14771
ATTGGGTACGTAAACCCTTCGCGTGGTGCATAACCTTTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAAATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGAAAGAGGTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCAAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCCTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGAGTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTCCATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAACGTTTTTGCAATAGAGAAAATCTTGCGAAAATAAATAAAACAGAATATAATATGTAATATTGTGGCACATTTTTGCGATTGAGAAAATTTTGCGAAAATTTATTTAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCTAATGTCTTCATTCTGTTTAGGATCAACATTGG

Ace file of the UniGene sp_v1.1_unigene14771

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucomutase, putative (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2]	-	-	80%
FL-Next	sp=Phosphoglucomutase, cytoplasmic 1; Zea mays (Maize).	-	-	81%
Blast2go	cytosolic phosphoglucomutase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	90%
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Galactose metabolism	00052	90%
Blast2go	Purine metabolism	00230	90%
Blast2go	Starch and sucrose metabolism	00500	90%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	80%

Source	KEGGs	Term	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	80%
AutoFact	Pentose phosphate pathway	00030	80%
AutoFact	Galactose metabolism	00052	80%
AutoFact	Purine metabolism	00230	80%
AutoFact	Starch and sucrose metabolism	00500	80%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	80%
AutoFact	Metabolic pathways	01100	80%
AutoFact	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	glucose metabolic process	GO:0006006	Biological Process	90%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	90%
Blast2go	phosphoglucomutase activity	GO:0004614	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Alpha-D-phosphohexomutase superfamily	IPR005841	-	90%
Blast2go	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	90%
Blast2go	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P93804

Fln msg:

Fln protein: MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSSGLKGVARSMPTSAALDVVAKSLNLRFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGVWAVLAWLSILAYKNKDNLDGGKLVTVEDIVRNHWASYGRHYYTRYDYENVDAGAAKELMSHLIKLQSSLPEVNKLIKEVRPDVSGVVDADEFEYKDPVDGSVSKHQGVRYLFEDGSRLVFRLSGTGSVGATIRLYIEQYEADSTKIGRDSQVALGPLVEVALRLSKMEEFTGRSSPTVIT*

Protein Length: 585

Fln nts: ATTGGGTACGTAAACCCTTCGCGTGGTGCATAACCTTTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAA_-_ATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGAAAGAGGTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCAAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCCTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGA___GTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTCCATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAACGTTTTTGCAATAGAGAAAATCTTGCGAAAATAAATAAAACAGAATATAATATGTAATATTGTGGCACATTTTTGCGATTGAGAAAATTTTGCGAAAATTTATTTAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCTAATGTCTTCATTCTGTTTAGGATCAACATTGG

Fln Alignment:

sp_v1.1_unigene14771___MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLGKRFFVTPSDSXXXXXXXXXXXXPYFSSGLKGVARSMPTSAALDVVAKSLNLRFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGVWAVLAWLSILAYKNKDNLDGGKLVTVEDIVRNHWASYGRHYYTRYDYENVDAGAAKELMSHLIKLQSSLPEVNKLIKEVRPDVSGVVDADEFEYKDPVDGSVSKHQGVRYLFEDGSRLVFRLSGTGSVGATIRLYIEQYEADSTKIGRDSQVALGPLVEVALRLSKMEEFTGRSSPTVIT
P93804_______________MGLFTVTKKATTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPVDQVRGATIVVSGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGPKEDFGIKYNMGNGGPAPESVTDKIFSNTTTISEYLISEDLPDVDISVVGVTSFSGPEGPFDVDVFDSSVDYIKLMKTIFDFEAIKKLLTSPKFTFCYDALHGVAGAYAKHIFVEELGADESSLLNCVPKEDFGGGHPDPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLVKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1545			95	4	0.996252
2017	77	22			1.0
2047	12			87	1.0
2070	22			77	1.0
2072	22			77	1.0
2075	86			13	1.0
2152	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain