SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14768

Length: 1639 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14768

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicle-associated membrane protein 725 n=4 Tax=rosids RepID=VA725_ARATH	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	vesicle-associated membrane synaptobrevin 7b	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	94%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	94%
Blast2go	mRNA export from nucleus	GO:0006406	Biological Process	94%
Blast2go	GTP binding	GO:0005525	Molecular Function	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	94%
Blast2go	nuclear membrane	GO:0031965	Cellular Component	94%
Blast2go	integral to membrane	GO:0016021	Cellular Component	94%
Blast2go	endosome	GO:0005768	Cellular Component	94%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Synaptobrevin	IPR001388	-	94%
Blast2go	Longin	IPR010908	-	94%
Blast2go	Longin-like	IPR011012	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA8

Fln msg:

Fln protein: MGQQSLIYSFVARGTVVLAEYTEFKGNFTSIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVANSLNKDFGSKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDKTENLRFQAQDFQKKGTELRRKMWFQNMKVKLIVLGIVVALILIIVLSICHGFNCSKK*

Protein Length: 224

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTTCCAGGTGGGCCGGTGACTTTTACTTTCCGCAACCTGAAGCGTTTTAGGCGGTCAGGTGGAAGAAGGGGGACAAGGGAGAACCTGAAGATTTGTTTGAATTAAGCTGTCATCGGGCAGGGCAAGCAGGTCTTCATATCTCTGCAATATATATCTATATGCGGCAGACCTTGTTTAGGCAATCTATTGTTTCGGGTATAAGTAGGGAAGTTTCCTCATTCTGTAGGATTCTTAAACGAATTTCTAGGGCCACGGAATGCGTCAAATTGCACATACCCACGCCTCCTTTCTTATAACAGGTTTACGCGCGATTTCTTCCCTTCTAGAAGGCCTCTTCCTCCTTTACTAAATCGGGTGTGGTTTCATCAGTTTTCTCCACAAAATCCCTGAAGTTCTCTTAATTTTTTCGAGAGTCGGTTTTTTATAGTGTTATCTACGGTTAATATCAGTGAAGGGCCTTTAGATCCGAAGGTACT_-_ATGGGGCAGCAATCTCTGATATACAGTTTTGTTGCGAGGGGCACCGTGGTGCTTGCGGAGTACACGGAATTCAAAGGCAATTTTACAAGTATTGCCGCTCAGTGCCTGCAAAAGCTTCCCGCCAGCAACAACAAGTTCACATACAATTGCGATAATCATACCTTCAACTACCTTGTTGAAGATGGCTTCGCATATTGTGTTGTCGCCGATGAATCTGTTGGAAGGCAAGTACCAATGGCATTTCTGGAGCGTGTTAAGGAGGATTTTAAGAGGAGATATGGTGGTGGAAGAGCTGACACAGCTGTTGCTAACAGCTTGAACAAGGATTTTGGGTCAAAATTGAAAGAGCACATGCAATATTGCATTGACCACCCTGAAGAGATCAGCAAACTTGCAAAAGTGAAGGCCCAGGTTTCTGAAGTGAAAGGTGTCATGATGGACAACATTGAAAAGGTTCTTGACCGTGGTGAGAAGATTGAACTTCTGGTTGATAAAACAGAAAACCTTCGTTTTCAGGCTCAGGACTTCCAAAAGAAGGGAACTGAGTTGCGCAGAAAGATGTGGTTTCAGAACATGAAAGTGAAATTGATTGTCCTCGGAATTGTGGTGGCCTTGATTCTCATAATTGTCCTTTCAATATGCCATGGATTCAATTGTTCGAAAAAATGA___TCTGGAATAGATAGAGGTCCATTTGAATTGGAACAACTTTTGATTGGTTATGGATGGCATTCTTGTTCTCTGTATTTCTCTCTATATTATCAGTTTCGGGTGAGATAGTTCTATGATGTTTGTCAGAGGGTATTTTGCTTGGACAATCACTGGTTGATAGTACATATTGACTAGTATGACAACGAAATGTTCTGAATATTCAGTGGGGCAGAGACTCTGATTGCGTACAGCAACTTTAGTGTATTATATCAAGGTCATGCATTTGTTATTGTTCTTATCTTTAACGAATTATTTTTTTACATCTTAAATTTGACCTTGCTAGCTTATGTTCAGTAAATATTCGATTTTGAGTGGTTGATAAATCCATTTTAACTTTGAAACAAGCATTTATGTAATTCTTTGGACAATTTGACTGCCAAGTAGCATAAAATTTTTGAAGGACCTTGCTGGTTTGTCGACAAAAAAG

Fln Alignment:

sp_v1.1_unigene14768___MGQQSLIYSFVARGTVVLAEYTEFKGNFTSIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVANSLNKDFGSKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDKTENLRFQAQDFQKKGTELRRKMWFQNMKXXXXXXXXXXXXXXXXXXSICHGFNCSKK
A9NNA8_______________MGQQSLIYSFVARGTVVLAEYTEFKGNFTTIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVGNSLNRDFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQDFQKQGTQLRRKMWFQNMKVKLIVLGIVVALILIIVLSVCHGFNCSKK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1270		96	3	0.988939
1465	4		71	1.0
1480	90		10	0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain