SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14741

Length: 1104 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14741

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	tau class glutathione s-transferase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	75%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	75%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	75%
Blast2go	Thioredoxin fold	IPR012335	-	75%
Blast2go	Thioredoxin-like fold	IPR012336	-	75%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2P9

Fln msg:

Fln protein: MGGTHMQEKRITSEKTDFITMEGCGEDEQVKLLGVIRSPFVARVRIALALKGIHYEFIEEDMPNNKSELLLQSNPVHKKIPVLIHNGKPVCESIIIVQYIEEAWDSKAPFLMPRDPYDLAVARFWAAFIDDKVFPSIVGAFRGQGEEQQKAVEESVANLLLLEEVLRSTGKEYFGGDEIGLVDIALGGLLVLIQTVEKVTNIVIIDTQKMPLLSAWADQFCKADKVKNALPDRTELFVFLSARRAQLTSSPPGN*

Protein Length: 256

Fln nts: _-_ATGGGAGGTACACATATGCAAGAGAAACGCATTACATCTGAAAAAACAGATTTCATAACAATGGAGGGTTGTGGAGAAGACGAGCAAGTGAAGCTGTTAGGTGTGATTCGCAGTCCCTTCGTGGCACGGGTTCGCATAGCACTTGCTCTTAAAGGGATCCATTATGAGTTCATTGAAGAGGACATGCCCAACAACAAGAGCGAGCTGCTACTGCAATCAAACCCTGTTCACAAGAAGATTCCAGTGCTCATCCACAACGGCAAGCCTGTTTGTGAATCCATCATTATTGTGCAATATATCGAGGAGGCATGGGACAGTAAAGCGCCATTTCTGATGCCCAGAGATCCATATGACCTAGCCGTTGCCCGCTTCTGGGCTGCCTTCATAGACGATAAGGTCTTTCCAAGTATTGTAGGAGCTTTCAGGGGCCAGGGTGAGGAGCAACAGAAAGCGGTTGAAGAATCGGTGGCAAACCTTCTTTTGTTGGAGGAAGTGTTGCGAAGTACCGGAAAAGAGTATTTTGGAGGAGATGAGATAGGGTTGGTTGACATCGCATTGGGCGGGCTATTGGTACTCATCCAAACGGTGGAGAAGGTTACCAATATAGTTATAATCGACACACAAAAAATGCCGCTATTAAGTGCATGGGCTGACCAATTTTGTAAAGCCGACAAAGTGAAAAATGCGTTGCCCGATCGGACCGAGTTATTTGTATTCCTGTCCGCGAGGAGAGCGCAGCTGACATCATCACCCCCTGGCAATTAG___AAAGGAGGTGGCTGACAGATAACTAAAATAATATTTAAGATAGCTAAAATAATAATATTTAGATAGTAGGTGTTGTCGTTGGTCTTGTTGTGTGTTGTGTTTCGATGTTGCGAGGACAGAACGCTGGAGTTTATGTATCAGGTGAGCTTATACTCCTGCAGAATTGTTGGGTAATAAAGCTGCCGGGGGATTTCAGTGCAATAGTATTGTTATATATGCTACTGTTCACTTCGGTCCTTCGAACATTGGAGTTATGTTTCATGTGATTTATGTAGCAGGTGAGTTTATACTCCTGCAGAATTGGTGGGTAATAAAGCTGCCGGGGGATTTCAGTGCAAT

Fln Alignment:

sp_v1.1_unigene14741___MEGCGEDEQVKLLGVIRSPFVARVRIALALKGIHYEFIEEDMPNNKSELLLQSNPVHKKIPVLIHNGKPVCESIIIVQYIEEAWDSKAPFLMPRDPYDLAVARFWAAFIDDKVFPSIVGAFRGQGEEQQKAVEESVANLLLLEEVLRSTGKEYFGGDEIGLVDIALGGLLVLIQTVEKVTNIVIIDTQKMPLLSAWADQFCKADKVKNALPDRTELFVFLSARRAQLTSSP
A9P2P9_______________MEACGEEGQVKLLGNTRSSFVVRVRIALALKGIHYEFIEENTPT-KSQLLLQSNPVHKKIPVLIHNGRPVCESMIIVQYIEETWDTKAPNLMPKDPYDRAIARFWTAFVEDKLVLSILGVFNGHGEQQLKAAEESVANFLLLEEVLQTTGKAYFGGDEIGLVDISLGGILVFTKTLEKVTNIVLIDTDKMPQLSAWVDRFSNADGVKEVLPDRGEIFELITGWRAKLTSPP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
870		75	25		0.996473
903		16		83	0.994512
913			83	16	0.994512
914		83		16	0.994512
934			20	80	0.995493
971	60		40		1.0
976	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain