SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14740

Length: 1741 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14740 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%
Blast2go	Anthranilate synthase.	EC:4.1.3.27	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	80%
Blast2go	Biosynthesis of phenylpropanoids	01061	80%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	80%
Blast2go	Biosynthesis of plant hormones	01070	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%
Blast2go	anthranilate synthase activity	GO:0004049	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	80%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	80%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	80%
Blast2go	Protein kinase-like domain	IPR011009	-	80%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	80%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg:

Fln protein: MERYKIIKQLGDGTYGTVWKAINRQTNDIVAIKKMKRKFYSWQECMNLREVKSLRKLNHPSIIKLKEVIRQSDYLYFVFEYMEYNLYQIIKDNGKLFPESKIRNWCFQVFQGLAYMHHQGYFHRDLKPENLLVTKDVIKIADLGLAREVCSAPPYTEYVSTRWYRAPEVLLQSPYYNSATDMWAMGAIMSELFTLQPLFPGSSEVDEIYKICSVIGTPDHQTWPEGLKLAASMNYQFPQFKSTNLSVLIPTASEEAIDLMTSLLSWDPAKRPTAAESLRHPFFQACFYVPPSLRMREAVLKNQSPGQVGKGAFGKKSDNQNFDSPSYAKAYNSVPFRKRDGSLNPNVPQKGVMEKQNASREQYVMSNIKQGHLQHFSNTKDPKYDGNNKEAIKDISSYLSQRQMGRSSLDYSFGAAGKRNSKVGHMGTSMNKSSSNCRGISLRPLHVNNQVTSSYQGRS*

Protein Length: 461

Fln nts: GTACTTGGCACTGTTTGGATCTTCCTCTTTGTGACATGGACAATCTTCGTGAGCTTGGGTGTTATTCGGTTTTTATTTTTGAAGTCTATTACGTTACCTTTTCTAAGCACAA_-_ATGGAGCGGTATAAGATCATCAAGCAACTGGGGGATGGCACCTATGGAACTGTTTGGAAGGCTATTAATAGGCAGACCAATGACATAGTTGCCATTAAGAAAATGAAGAGGAAATTTTATTCTTGGCAGGAATGTATGAATCTTAGAGAAGTGAAGTCTCTACGCAAATTAAATCATCCCAGCATCATAAAGCTCAAGGAGGTTATTAGACAAAGTGACTATTTATATTTTGTATTTGAGTACATGGAGTACAATTTGTATCAAATAATAAAAGATAATGGCAAGCTATTCCCAGAGTCAAAAATACGCAATTGGTGCTTCCAAGTATTCCAAGGTCTTGCTTATATGCACCATCAAGGGTATTTTCACCGCGATCTTAAACCAGAAAATCTACTGGTGACTAAAGATGTTATTAAAATTGCTGATCTTGGTCTTGCTCGTGAGGTTTGCTCGGCACCCCCTTATACAGAATATGTCTCGACAAGATGGTATCGTGCTCCTGAAGTATTGCTTCAGTCACCATATTATAATAGTGCCACTGATATGTGGGCTATGGGGGCCATAATGTCAGAACTTTTCACCTTGCAACCCCTGTTTCCTGGTTCTAGTGAGGTAGATGAGATTTACAAGATCTGCAGTGTCATTGGCACTCCTGATCATCAGACATGGCCTGAAGGGCTAAAACTTGCAGCATCTATGAATTACCAATTTCCACAGTTTAAGTCCACCAATCTTTCAGTTTTAATACCAACTGCAAGCGAAGAAGCCATTGATCTTATGACTTCACTGTTGTCATGGGATCCAGCTAAGAGGCCAACTGCAGCTGAATCACTCCGGCATCCTTTCTTCCAGGCTTGCTTCTATGTACCCCCATCCCTACGAATGAGAGAAGCAGTTTTGAAGAACCAATCGCCAGGACAAGTAGGGAAAGGAGCTTTTGGGAAAAAGTCTGATAACCAAAATTTTGATTCTCCATCTTATGCAAAAGCATACAACAGTGTTCCTTTCAGAAAGAGGGATGGTTCTTTAAACCCTAATGTTCCACAAAAAGGAGTGATGGAAAAACAGAATGCAAGTCGTGAGCAGTATGTCATGAGCAATATCAAACAGGGTCACTTACAACATTTCAGCAATACGAAAGATCCTAAGTATGACGGTAACAATAAAGAAGCTATCAAGGATATATCTTCGTATTTATCACAAAGGCAAATGGGTAGGAGCAGTTTAGATTATTCGTTTGGTGCTGCAGGCAAGCGTAATTCAAAAGTTGGGCATATGGGAACATCTATGAATAAATCTTCATCCAATTGCAGAGGCATTTCTCTTCGTCCCTTGCATGTTAATAATCAAGTTACTTCCAGCTATCAAGGCAGATCATAA___GCCAGGACTTGTCCATGGCAGCTTGTGCCTGGGGCATAGTTAGATGACATTTTTATGCAGACAGTCACCCGTAATCTGGACTTGAATTTCCTTTCTGAATTGACTTTGTATTGATATTGGAGTGTGGGGACAGACTGGTTTTGGCTTTTAGATCTTACGTCAGGATTTGTCTCTTTATTTCTATGTGAACACCTGAGAAGCAGTATTGAAGTCAGTTTAAAAGTTTATGCTGTCTCTAGCTAGTTTTTG

Fln Alignment:

sp_v1.1_unigene14740___MERYKIIKQLGDGTYGTVWKAINRQTNDIVAIKKMKRKFYSWQECMNLREVKSLRKLNHPSIIKLKEVIRQSDYLYFVFEYMEYNLYQIIKDNGKLFPESKIRNWCFQVFQGLAYMHHQGYFHRDLKPENLLVTKDVIKIADLGLAREVCSAPPYTEYVSTRWYRAPEVLLQSPYYNSATDMWAMGAIMSELFTLQPLFPGSSEVDEIYKICSVIGTPDHQTWPEGLKLAASMNYQFPQFKSTNLSVLIPTASEEAIDLMTSLLSWDPAKRPTAAESLRHPFFQACFYVPPSLRMREAVLKNQSPGQVGKGAFGKKSDNQNFD---------SPSYAKAYNSVPFRKRDGSLNPNVPQKGVMEKQNASREQYVMSNIKQG-HLQHFSNTKDPK-YDGNNKEAI-KDISSYLSQRQMGRSSLDYSFGAAGKRNSKVG
B8LR77_______________MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFSESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYVPPSLRVREPISKQRFSANKGKRAPETKPGRQNFEVLANMKTSSNPSAAKMYHSV-------NSGPQRRLSVERQSQGTNQEQFFKTNGKQACYRLPIKNVEGPPLVDGNSVGFISKDVCA--SDRQIERQVSGRPPGTSTRVNVKAG

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
204		85	14		0.993533
207		85	14		0.993533
209	85		14		0.993533
219	14	85			0.993533
227	85	14			0.993533
300			60	40	1.0
1259			87	12	0.992554
1515	88		11		0.923564
1516	88		11		0.923564
1518		11		88	0.923564
1519	11			88	0.923564
1521		88	11		0.923564
1522	11			88	0.923564
1524			11	88	0.923564
1649	83		16		0.994512
1653		16		83	0.994512
1661			16	83	0.994512
1675	50	50			1.0
1676		50		50	1.0
1677		50		50	1.0
1679	50		50		1.0
1680	50		50		1.0
1682	50		50		1.0
1683	50			50	1.0
1684		50		50	1.0
1685	50			50	1.0
1686		50	50		1.0
1687		50		50	1.0
1688		50		50	1.0
1690	50			50	1.0
1691			50	50	1.0
1692		50	50		1.0
1694		50	50		1.0
1695	50			50	1.0
1696		50		50	1.0
1699	50	50			1.0
1700			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain