SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14736

Length: 968 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14736 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MPK14 - putative MAPK; K04371 extracellular signal-regulated kinase 1/2 [EC:2.7.11.24]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mpk14 - mapk	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	MAP kinase activity	GO:0004707	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	80%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	80%
Blast2go	Protein kinase-like domain	IPR011009	-	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	80%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
44	50	50			1.0
521	88			11	0.923564
525	88		11		0.923564
526	88			11	0.923564
528	11			88	0.923564
529	88	11			0.923564
532		11	88		0.923564
533	11		88		0.923564
534	11			88	0.923564
536		88	11		0.923564
540	77	11		11	0.968132
544		71		28	1.0
545		71	28		1.0
546	28			71	1.0
548	16			83	0.999991
550		16		83	0.999991
551	83	16			0.999991
553	16	83			0.999991
554	83		16		0.999991
557		16	83		0.999991
559			16	83	0.999991
560	16			83	0.999991
562			16	83	0.999991
572	88		11		0.923564
606	12		87		0.992554
610	87	12			0.992554
611	87	12			0.992554
612	12		87		0.992554
613	25		75		1.0
614	75		12	12	0.975346
615			12	87	0.992554
617			12	75	0.975346
620	12			87	0.992554
624		14	85		0.993533
625		14	85		0.993533
626	83	16			0.994512
627		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain