SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14733

Length: 1422 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14733

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S7L8_RICCO	-	-	80%
FL-Next	tr=Protein binding protein, putative; Ricinus communis (Castor bean).	-	-	80%
Blast2go	protein binding	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	86%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9S7L8

Fln msg: Distance to subject end: 458 aas, your sequence is shorter than subject: 208 - 661

Fln protein: MAQLSAAEIKQYEHSPVHFAVANRDYAALRQIFTSLPRLPKAGEVNTEEESILAEERADILSASIDRRDVPGRETPLHLAVKLKDATSVDMLMAAGADWSLQNEQGWSALQEAICAREDALALIITRHYQPLAWAKWCRRLPRIVAAMRRMRDFYMEVTFQFESSVIPFIGRIAPSDTYKIWKRGSNLRADMTLAGFDGFRIQRSDQS

Protein Length: 209

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTGTGATGTGAAACATCATAGAGCAGAGCACAGCAGGAGGAGCACGTGAAGGTACAGATATGACAGTATAGGCTTATGAACTGCTGCAGGTAACAGTGTTGTAATCGATTATCATTTTCCCTCCTTTGCATTTATTCTAAGGGATCATTCTCGATGGGGTTTAGGCCTTTTGGGAATCGTGTGTAGGGTAATTTGAGGTCATGGTAAAGGGTAGTTGTCTGCTGTTGCAGAGGATAAGAGGAGCAGACCGACTTAGAAAAGAATAGAGTAGGTCTTAGCATCCCTTTTCCATAATCCTTGCCTGTTATAGTAAAAATGCGATGCTGTTGTTATCTATCAGGTAGTTTTCTGTCATTCTGAATGTTCATATATTGTTTTTGAGCGCTCATATAGTGTTTTCCGAATGCTCATGCGTTGATTTGAGCACCCATATATCGTTTCTGAACGCCCTTGTATTCTTTTTGAGCACCCATATAGCGTTTGTGAATACCCATTTATTCTTTTTGAGCACACATGTATTGTTTCTGAATACCCATGTAGCCTTTGTGAGTACATGTTATGAAGAATTGATAATACCTTGTTTCAGAGGAAGCCCATTTGCCCTATTATTGCAATGGGTAAGTTTTCTGGAGCTTTGGGATGTAAGGCCATCCGAAAATCTCTTTCTGAGCCTGTACAACCATGGGAATTCCATTATCTGGAGTCTGGAAATCTCATGTGAGCATTAAGCATTTTTTGGCGCTGTTAAGCAAAGGGTTTCGAGGCTTACC_-_ATGGCACAGCTTTCTGCAGCTGAAATTAAGCAGTATGAACACAGCCCTGTGCACTTTGCAGTGGCCAATAGGGACTATGCAGCCCTTCGTCAGATTTTTACTTCACTGCCCCGCCTTCCTAAGGCTGGCGAGGTTAATACCGAAGAAGAATCAATTTTAGCAGAGGAGCGCGCAGACATCTTGTCGGCATCCATAGACCGCAGAGATGTGCCAGGCCGAGAGACTCCTCTTCATCTGGCAGTTAAACTGAAAGATGCAACGTCTGTTGATATGCTTATGGCTGCTGGTGCAGATTGGAGTCTGCAGAATGAACAAGGATGGAGCGCTTTGCAGGAGGCCATCTGCGCCAGAGAGGATGCACTTGCTCTGATTATTACTAGACATTATCAGCCTTTGGCCTGGGCAAAGTGGTGCCGTCGCTTGCCTCGGATAGTTGCTGCAATGCGAAGAATGAGGGACTTCTACATGGAGGTTACTTTTCAATTTGAGAGTTCCGTGATCCCATTCATTGGACGCATTGCTCCTTCTGACACTTACAAAATTTGGAAGCGAGGCTCTAATTTGCGCGCCGACATGACTCTTGCTGGGTTTGACGGCTTCAGGATACAACGGTCCGATCAGAGC

Fln Alignment:

sp_v1.1_unigene14733___QYEHSPVHFAVANRDYAALRQIFTSLPRLPKAGEVNTEEESILAEERADILSASIDRRDVPGRETPLHLAVKLKDATSVDMLMAAGADWSLQNEQGWSALQEAICAREDALALIITRHYQPLAWAKWCRRLPRIVAAMRRMRDFYMEVTFQFESSVIPFIGRIAPSDTYKIWKRGSNLRADMTLAGFDGFRIQRSDQS
B9S7L8_______________KYAHSPAHIAVARRDYAALRHVISTLPRLAKAGEVNTEEESLAAEERADAVSAVIDRRDVPGRETPLHLAVKLRDPISAEILMAAGADWSLQNEHGWSALQEAVCTREERIAMIIARHYQPLAWAKWCRRLPRIVASASRIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRSDQT

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
539		85	14		0.993533
543			14	85	0.993533
545		14		85	0.993533
546	85	14			0.993533
562		61		38	1.0
805	85			14	0.993533
806		85		14	0.993533
807	85	14			0.993533
810	14			85	0.993533
811			14	85	0.993533
813		85	14		0.993533
814	14			85	0.993533
816		85	14		0.993533
818		14	85		0.993533
819	14	85			0.993533
820			14	85	0.993533
822	71	14			0.984337
823	85	14			0.993533
825	14	14		71	0.984337
827	75		12	12	0.975346
941	14		85		0.993533
989		14		85	0.993533
1226	12	87			0.992554
1227			87	12	0.992554
1229	87		12		0.992554
1230			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain