SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14726

Length: 2728 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14726
CGTCGTGACCTTGGCTGTCACTCAAACTTCGTCGTGGCGTTGGCTTTCCTTGGCTTTGGCTTTGGCTTTCGATGTAGTATTTTTGCAAACTGATTCAAAACGTCTGCACAGAGGACATCCATTTTGCATACTAAGAATAGAATTGGATTATCCAATAATTTCGCTTGTGAGATTCTTACCTAATGTCAGCTACCCCCACACCATTCAATTAATGCCATCAACGCCTGGAAAACTATTTTCTCTTTCCTATAAATTGCTCTTATTCCTTTAGCTTTCTTTCACGATCTACTATTGCGGTGGTGCCTTTGTTTTGATTAGCTCTGCTCTGCTCACGAGAATGGCGAATGCGGATCAGCTAGCTCACGAGAGGAAGAAGGCCCAATTCGATGTGGGTGCCCTAAAGGTAGTATGGGCTGGTTCTCAACATGCTTTGCAAATCTCAGATCGCATGGCCAAGCTCGTTGCCAGTGATCCTGTGTTTCTCAAAGATGATCGCCCAAGATTGAGTCGCAAAGAATTGTTTAGAAAAACACTGAACAAAGCAGCACATGCATGGAAACTCATTGTAGATCTCCGACTTTCAGAAGAGGAAGCATCAAGTCTAAGGTTTTTTGTTGATGAACCTGCATATACAGATCTTCATTGGGGAATGTTTATACCAGCTATAAAGGGGCAGGCAAATGAAGAGCAGCAGCAGGAGTGGCTTCCTCTTGCAAATAAAATGCAAATAATTGGTTGTTATGCACAAACGGAGATGGGCCATGGTTCCAATGTCCAAGGTCTTGAGACAACTGCAACGTTTGACCCAAATACTGATGAATTTGTTTTAAATAGCCCAACTTTGACTTCAACCAAGTGGTGGCCAGGAGGCTTAGGAAAAGTATCAACACATGCAATTGTATATGCTCGCCTCATAACTGATGGTCAGGACTACGGTGTGCATGGTTTCATTGTTCAAATACGCAGTCTTGAAGATCACCAATCACTTCCAGGAGTTACAGTTGCTGATATTGGTATGAAGTTTGGAAATGGTGCATATAATACCATGGATAATGGGCTGCTAAGATTTGATCATGTTCGGATACCACGCAAGCAAATGCTAATGCGGCTTTCTAAAGTTACTAGGGAAGGAAAATATCTGCATTCTGATGTCCCTAGGCAACTTGTTTATGGAACCATGGTTTATGTGCGACAAACAATTGTCTCAGATGCTTCTAATTACCTCTCCCGGGCAGTTTGCATTGCTGTGAGATACAGTGCTGTCAGACGACAATTTGGTTCACAGGCTGGTGGTCCTGAAATTCAGGTGATTGATTACAAGACTCAACAAAACAGGCTCTTTCCCTTGCTGGCTACAGCTTATGCCTTCCGATTTGTGGGTGAATGGATGAAATGGCTATACTTGGATGTAACAAAACGTTTGGGAGCAAAGGATTTCTCAACATTGGCTGAGGCACATGCATGCACTGCTGGGTTAAAGTCATTGACAACATCAGTGACTGCGGATGGCATTGAAGATTGTCGTAAGCTTTGTGGTGGACATGGGTACTTGTGCAGTAGTGGGCTTCCAGAGCTGTTTGCTGTATATGTTCCTGCGTGCACATATGAAGGAGATAACACAGTTCTGCTTCTACAGGTAGCAAGATTCTTGATGAAGACAGTCCAACAACTAAGATCAAAGAGGCCTCTGGGAACTGCAGCATATTTGGGAAAGTTGGAATATCTGTTGGAGAATAACTGCACTGTTTCTAAAGCTGAGGATTGGCTGAAGCCTTCAGTTGTGTTGGAGGCATTTGAAGCGAGATCAGCAAGGCTTGCTGCAAATTGTGCGTTACAAGTCAGCCAAGCATCCAGTCCAGAAGCAGGTTTCAGTGAACTATCTAGTGAGCTGGTAGACGTAGCAAGAGCTCATTGTGAGTTGATAGTTGTTTCAAAATTTATAGAGAAAGTACAGCAAGACATTCCAGGAGAGGGAATCAAACATCAGCTTGAGTTGTTATGCAGTGTGTATGCACTATCATTGCTGCACAACCATCTTGGTGATTTCCTTTCCACTGGTTACCTTGATAGCGAACAATCAGCACTTGCAACTGATCAGCTACGTGCACTCTACTCACAGGTTCGTCCAAATGCTGTGGCTCTTGTAGATGCATTTAATTATACAGATCACTTTTTGGGATCTATACTTGGACGATATGATGGAAATGTCTATCCACATCTATATGAGGAAGCTTTCAAGGATCCTTTGAATGAGACAGTTGTGCCCGAAGGTTATGAGGAACACATTCGTCCACTTCTCAAGCAACAGGTTAAAATTTCAAGATTGTGAATTAGAAGGTTTAAATTATTTCCAGGATATATTTATGTAAATATTATATTTTCCGTCCTACTATTGAATAATTTGACGTCCATGCATGGTTTTGGAGTCACTATTGTTTGATAAACATACCATTGATATACTTGTCTACTTGAGCACAGTTCTGTTGTTACTGCATTAAGCAGGGCCAAGTGATAAATAAACTCGTTCAAGAAGAAAAAGTCTATTTGGAAATGCTTAATGAATACTGGCTTTGCAAAATGTTATTGCTTTTTTGGACAGTTTATTGATTGATTACGGTTGGATAATTCTTGATGAAATTTCCTACGAATAATTTGAGGTAATGGCCCACCAGAAACTAGACGTTCGCGTCTTAACTGAATCAAATGATATTTTATTAGCAAGGAATTT

Ace file of the UniGene sp_v1.1_unigene14726

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA oxidase (EC:1.3.3.6); K00232 acyl-CoA oxidase [EC:1.3.3.6]	-	-	75%
FL-Next	sp=Acyl-coenzyme A oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	acyl- oxidase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		86%
Blast2go	Valine, leucine and isoleucine degradation	00280		86%
Blast2go	beta-Alanine metabolism	00410		86%
Blast2go	Propanoate metabolism	00640		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Biosynthesis of secondary metabolites	01110		86%
Blast2go	Cytochrome-c oxidase.	EC:1.9.3.1	-	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Oxidative phosphorylation	00190		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	86%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	86%
Blast2go	alpha-Linolenic acid metabolism	00592	86%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Acyl-CoA oxidase.	EC:1.3.3.6	-	0.0	75%

Source	KEGGs	Term	Identity
AutoFact	Fatty acid metabolism	00071	75%
AutoFact	alpha-Linolenic acid metabolism	00592	75%
AutoFact	Biosynthesis of unsaturated fatty acids	01040	75%
AutoFact	Biosynthesis of plant hormones	01070	75%
AutoFact	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	response to fungus	GO:0009620	Biological Process	86%
Blast2go	response to wounding	GO:0009611	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	86%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	86%
Blast2go	pollen development	GO:0009555	Biological Process	86%
Blast2go	defense response to insect	GO:0002213	Biological Process	86%
Blast2go	long-chain fatty acid metabolic process	GO:0001676	Biological Process	86%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	86%
Blast2go	cytochrome-c oxidase activity	GO:0004129	Molecular Function	86%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	86%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	86%
Blast2go	peroxisome	GO:0005777	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA oxidase, C-terminal	IPR002655	-	86%
Blast2go	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	86%
Blast2go	Acyl-CoA dehydrogenase/oxidase C-terminal	IPR009075	-	86%
Blast2go	Acyl-CoA dehydrogenase/oxidase	IPR009100	-	86%
Blast2go	Acyl-CoA oxidase	IPR012258	-	86%
Blast2go	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	86%
Blast2go	Acyl-CoA oxidase, peroxisomal	IPR023570	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUR5

Fln msg:

Fln protein: MANADQLAHERKKAQFDVGALKVVWAGSQHALQISDRMAKLVASDPVFLKDDRPRLSRKELFRKTLNKAAHAWKLIVDLRLSEEEASSLRFFVDEPAYTDLHWGMFIPAIKGQANEEQQQEWLPLANKMQIIGCYAQTEMGHGSNVQGLETTATFDPNTDEFVLNSPTLTSTKWWPGGLGKVSTHAIVYARLITDGQDYGVHGFIVQIRSLEDHQSLPGVTVADIGMKFGNGAYNTMDNGLLRFDHVRIPRKQMLMRLSKVTREGKYLHSDVPRQLVYGTMVYVRQTIVSDASNYLSRAVCIAVRYSAVRRQFGSQAGGPEIQVIDYKTQQNRLFPLLATAYAFRFVGEWMKWLYLDVTKRLGAKDFSTLAEAHACTAGLKSLTTSVTADGIEDCRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNTVLLLQVARFLMKTVQQLRSKRPLGTAAYLGKLEYLLENNCTVSKAEDWLKPSVVLEAFEARSARLAANCALQVSQASSPEAGFSELSSELVDVARAHCELIVVSKFIEKVQQDIPGEGIKHQLELLCSVYALSLLHNHLGDFLSTGYLDSEQSALATDQLRALYSQVRPNAVALVDAFNYTDHFLGSILGRYDGNVYPHLYEEAFKDPLNETVVPEGYEEHIRPLLKQQVKISRL*

Protein Length: 665

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTTCGTCGTGGCGTTGGCTTTCCTTGGCTTTGGCTTTGGCTTTCGATGTAGTATTTTTGCAAACTGATTCAAAACGTCTGCACAGAGGACATCCATTTTGCATACTAAGAATAGAATTGGATTATCCAATAATTTCGCTTGTGAGATTCTTACCTAATGTCAGCTACCCCCACACCATTCAATTAATGCCATCAACGCCTGGAAAACTATTTTCTCTTTCCTATAAATTGCTCTTATTCCTTTAGCTTTCTTTCACGATCTACTATTGCGGTGGTGCCTTTGTTTTGATTAGCTCTGCTCTGCTCACGAGA_-_ATGGCGAATGCGGATCAGCTAGCTCACGAGAGGAAGAAGGCCCAATTCGATGTGGGTGCCCTAAAGGTAGTATGGGCTGGTTCTCAACATGCTTTGCAAATCTCAGATCGCATGGCCAAGCTCGTTGCCAGTGATCCTGTGTTTCTCAAAGATGATCGCCCAAGATTGAGTCGCAAAGAATTGTTTAGAAAAACACTGAACAAAGCAGCACATGCATGGAAACTCATTGTAGATCTCCGACTTTCAGAAGAGGAAGCATCAAGTCTAAGGTTTTTTGTTGATGAACCTGCATATACAGATCTTCATTGGGGAATGTTTATACCAGCTATAAAGGGGCAGGCAAATGAAGAGCAGCAGCAGGAGTGGCTTCCTCTTGCAAATAAAATGCAAATAATTGGTTGTTATGCACAAACGGAGATGGGCCATGGTTCCAATGTCCAAGGTCTTGAGACAACTGCAACGTTTGACCCAAATACTGATGAATTTGTTTTAAATAGCCCAACTTTGACTTCAACCAAGTGGTGGCCAGGAGGCTTAGGAAAAGTATCAACACATGCAATTGTATATGCTCGCCTCATAACTGATGGTCAGGACTACGGTGTGCATGGTTTCATTGTTCAAATACGCAGTCTTGAAGATCACCAATCACTTCCAGGAGTTACAGTTGCTGATATTGGTATGAAGTTTGGAAATGGTGCATATAATACCATGGATAATGGGCTGCTAAGATTTGATCATGTTCGGATACCACGCAAGCAAATGCTAATGCGGCTTTCTAAAGTTACTAGGGAAGGAAAATATCTGCATTCTGATGTCCCTAGGCAACTTGTTTATGGAACCATGGTTTATGTGCGACAAACAATTGTCTCAGATGCTTCTAATTACCTCTCCCGGGCAGTTTGCATTGCTGTGAGATACAGTGCTGTCAGACGACAATTTGGTTCACAGGCTGGTGGTCCTGAAATTCAGGTGATTGATTACAAGACTCAACAAAACAGGCTCTTTCCCTTGCTGGCTACAGCTTATGCCTTCCGATTTGTGGGTGAATGGATGAAATGGCTATACTTGGATGTAACAAAACGTTTGGGAGCAAAGGATTTCTCAACATTGGCTGAGGCACATGCATGCACTGCTGGGTTAAAGTCATTGACAACATCAGTGACTGCGGATGGCATTGAAGATTGTCGTAAGCTTTGTGGTGGACATGGGTACTTGTGCAGTAGTGGGCTTCCAGAGCTGTTTGCTGTATATGTTCCTGCGTGCACATATGAAGGAGATAACACAGTTCTGCTTCTACAGGTAGCAAGATTCTTGATGAAGACAGTCCAACAACTAAGATCAAAGAGGCCTCTGGGAACTGCAGCATATTTGGGAAAGTTGGAATATCTGTTGGAGAATAACTGCACTGTTTCTAAAGCTGAGGATTGGCTGAAGCCTTCAGTTGTGTTGGAGGCATTTGAAGCGAGATCAGCAAGGCTTGCTGCAAATTGTGCGTTACAAGTCAGCCAAGCATCCAGTCCAGAAGCAGGTTTCAGTGAACTATCTAGTGAGCTGGTAGACGTAGCAAGAGCTCATTGTGAGTTGATAGTTGTTTCAAAATTTATAGAGAAAGTACAGCAAGACATTCCAGGAGAGGGAATCAAACATCAGCTTGAGTTGTTATGCAGTGTGTATGCACTATCATTGCTGCACAACCATCTTGGTGATTTCCTTTCCACTGGTTACCTTGATAGCGAACAATCAGCACTTGCAACTGATCAGCTACGTGCACTCTACTCACAGGTTCGTCCAAATGCTGTGGCTCTTGTAGATGCATTTAATTATACAGATCACTTTTTGGGATCTATACTTGGACGATATGATGGAAATGTCTATCCACATCTATATGAGGAAGCTTTCAAGGATCCTTTGAATGAGACAGTTGTGCCCGAAGGTTATGAGGAACACATTCGTCCACTTCTCAAGCAACAGGTTAAAATTTCAAGATTGTGA___ATTAGAAGGTTTAAATTATTTCCAGGATATATTTATGTAAATATTATATTTTCCGTCCTACTATTGAATAATTTGACGTCCATGCATGGTTTTGGAGTCACTATTGTTTGATAAACATACCATTGATATACTTGTCTACTTGAGCACAGTTCTGTTGTTACTGCATTAAGCAGGGCCAAGTGATAAATAAACTCGTTCAAGAAGAAAAAGTCTATTTGGAAATGCTTAATGAATACTGGCTTTGCAAAATGTTATTGCTTTTTTGGACAGTTTATTGATTGATTACGGTTGGATAATTCTTGATGAAATTTCCTACGAATAATTTGAGGTAATGGCCCACCAGAAACTAGACGTTCGCGTCTTAACTGAATCAAATGATATTTTATTAGCAAGGAATTT

Fln Alignment:

sp_v1.1_unigene14726___DQLAHERKKAQFDVGALKVVWAGSQHALQISDRMAKLVASDPVFLKDDRPRLSRKELFRKTLNKAAHAWKLIVDLRLSEEEASSLRFFVDEPAYTDLHWGMFIPAIKGQANEEQQQEWLPLANKMQIIGCYAQTEMGHGSNVQGLETTATFDPNTDEFVLNSPTLTSTKWWPGGLGKVSTHAIVYARLITDGQDYGVHGFIVQIRSLEDHQSLPGVTVADIGMKFGNGAYNTMDNGLLRFDHVRIPRKQMLMRLSKVTREGKYLHSDVPRQLVYGTMVYVRQTIVSDASNYLSRAVCIAVRYSAVRRQFGSQAGGPEIQVIDYKTQQNRLFPLLATAYAFRFVGEWMKWLYLDVTKRLGAKDFSTLAEAHACTAGLKSLTTSVTADGIEDCRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNTVLLLQVARFLMKTVQQLR-SKRPLGTAAYLGKLEYLLENNCTVSKAEDWLKPSVVLEAFEARSARLAANCALQVSQASSPEAGFSELSSELVDVARAHCELIVVSKFIEKVQQDIPGEGIKHQLELLCSVYALSLLHNHLGDFLSTGYLDSEQSALATDQLRALYSQVRPNAVALVDAFNYTDHFLGSILGRYDGNVYPHLYEEAFKDPLNETVVPEGYEEHIRPLLKQQVKISRL
A9NUR5_______________EDLARERAETTFDVEAMKIIWAGGRQAFELQHKLASIVANDPVFRKDNKPNMTRKELFIGGIRKAAHCRELALELGLSEDDARTLRTLRGEKAYDDLHWNMFIPVLRTQATAEQQKKWLPLATSMSVIGCYAQTEIGHGSNVQGLETTATFDPSTDEFILNSPTLTSTKWWPGGLGKVATHAIVHARLILD-KDYGVHAFIVQIRSLEDHKPLRTITVGDIGQKFGNGGNNTVDNGFAQFNNTRIPRDNLLMRMAIVTKEGKYVRQNVPKQMLYGGMIAARQIILMEASMDLSHAVTIAVRYSAVRRQFSLDDGNREIQVLDYPTQQQKIFPLLASAYAFRFVGQWMESLYSEVMYQFENNNFSALAEIHACTSGLKALTTSVTADAIEKCRKACGGHGYLCASGLPELFAAYIPSCTYEGDNTLLFIQVGKFLVKTILNMKTSFRPQGTTQYLADLDLLTKKNCEVSDEDDWLSSNVILGAFKARAARLALSISRQILKFPNQDAGFEELSVNLVSVAQAHCQLIVLSKFIDKVHGAIPGLNVKKQLQLLCNTYGLSLVCEHVEDFLVTGYLTKRQANLARHQLRSLLSHVRPNAIALVDSFDHTDHYLGSVLGRYDGDVYTHLYMEALKDPFNNSAVTEGYKEYIEPIIKQRLQSSKL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
183		85	14		0.993533
185	85	14			0.993533
186	85		14		0.993533
187		41		58	1.0
193		50		50	1.0
194			41	58	1.0
198		50	8	41	1.0
199		50		50	1.0
200		58	41		1.0
201	58		41		1.0
204	50		41	8	1.0
205		58		41	1.0
206	8	41			1.0
208		41		58	1.0
1412	90		10		0.90298
1899	85		14		0.999981
2171	90			9	0.999842
2172	9			90	0.999842
2174	90			9	0.999842
2176	9			90	0.999842
2579	11	88			0.923564
2581	85	14			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
50	69	TTGGCT TTGGCT TTGGCT TT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain