SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14711

Length: 2231 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14711
ATCCACTGCAGAAGATCTGGACCGTTTTCATAAAGAATTGCAAATTTTATGCAAGTTGGATCATCCTAGCATAGCGAATTTGGTGGCAGCACATGCAAGACCCCCAAATTACATGTTTTTCTTCCCCTTCTATGAGAATGGTAACTTGGCTCAAGCTTTGCATGCTAAGGAATGGAATCCCTCCGTGGAGCAAATATTGACAATAATAATACAACTAGCCAGGGCTTTGCAGTACCTTCATAAGCTTGGAATTGTCCATAGGGATGTCAAACCTGCAAATATTCTTCTTGACAACAAATTGGAAGCACACCTTGCGGATTTTGGATTGGCAGTCTATGGAAAAGATCTTGAAAAGACAACTGTACAAAATTGGAAGTCATCTGGGAAACCAACTGGGGGTTTCCATAAAAAGAACATGGTTGGAACACTTATTTATATGGCACCCGAAGTACTCAAAAAAGAAATACATACTGAGAAGTCAGATATATATAGTTTTGCAATCACAATCAATGAACTTGTGACAGGTGTTGTTCCTTACACTGACCTTCAGACTGAGGCTCAGGCTCACACAGTACTAGAAATGACTTATACTGAACAACAACTTACAGCAGCTATTACCTCTGAAGGATTGCGCCCAGTACTTGCTGCTCCAGAGTCAGGGCTCCCATCCAGTCTATTGTCACTAATAAAGCTATGCTGGGATGACAATCCTGTGCAGCGCCCTTCCATTGATTTTTTGGTTAAAAGATTGGAATCAATTATTGCCCAATATAAGCATGAGGTACTAGAAAATAAGAACAGAGATGTTAATACTCTTTTGGATGCAAACCAACAGTGTCCAGCTCCATTTAACTATAATGATCAAAATCAAGTGGATATCAATTGGTCATATCAGGGTGCAATAACGGCAGAGAAAATCCAATCCGATGATCAGTTTTCTGTTAAGAAATGGATTAAAACTTTAGCCGAACATCCTGTGTATCATCCAACATTATCATGGGGTTCATTTGCCACTTGTGGTAGGCGAGAAATGATGGAGGACACACACTTTTTGTTGCCTCATTTGGGAAATGAGAAACATGCCTTTGCATTTGGGATCTTTGATGGTCATCGAGGTGCTGCAGCTGCACAGTTTGCAGTAAATGCCATACCAGGAATTTTGCATTCATTTGGTTCATTCCAAAGCCCATCAGAAGCATTGGTGAATGCATTTATTAGAACAGACATCTTGTTTCGTAATGAACTGGAATTGCATTGGTTATACAACAAAAGGTCAACGTAAGGATTGGCACCCTGGTTGCACTGCTGCAGTAGCATTGATTGTAGAAAACAGAGTTTTCGTAGCAAATGCTGGTGACTGTAGGACAATTTTGTGCAGAAAAGGACATGCAGTTGCTCTTAGTAAGGACCATGTTGCAAGCTGCATGGAAGAAAGAGATAGAGTCATCAAAGCAGGGGGACAAGTTAAATGGCAAGTAGATACTTGGCGTGTTGGTTCAGCTGCTCTCCAGGTTACACGTTCCATTGGTGACGACGATGTGAAGCCAGCAGTAACTGCGGAGCCAGAAATTACAGAGACTCTATTATCAACAGATGATGAATTCTTGGTGATGGCAAGTGATGGACTTTGGGATACAATAAGCAATGAAGAAGTGATATCTCTTATGAAAGATACTGTTAAAGAACCCGGCATGTGCTCTAAAAGACTTGCAACCACGGCCGTGGAAAGAGGGAGTAAAGATAATGTAACAGTAATTGTTATATTTCTTCGTCCAGTTTCAACTGTAGAGCGAATCTACTGAATATCACTATAAAGTCCGAGTTAGCGAGGAACACAAGGCTTTTTTGCTTTTCTTAAGTTGATTTGATCTGATAATTTGGTGTTCAGGTCAGGCAATGTCATTTTTTGATTCCTTGACGTACTCGTCGTTCTATGTCTCCCGTTTAATTTATAGAAATAAGAGTAAAATTATTGATGAGCATTTTACTAAAAGGATCCTGCCTTTATTGTTTTAATGGTTTGAATAACAATAATATCGGATTTATCATGCGGCGAGAGATATCAAAATCTGAACTTTTTCTCAGGTTTTGTACAAAATAAAGAGGTTTGTATCTTGAGAGATTTGATCCCTTTCAGTGTATGATAGATCCGGTGTTAAGATGGATTAGATGGATACAATGTCATGTTTTTAGAATTATTATTATGTATATGTTTGAGATAAACTTCATAC

Ace file of the UniGene sp_v1.1_unigene14711

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase, putative (EC:2.7.11.25 3.1.3.16)	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	0.0	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	72%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 154 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is longer than subject: 390 - 281

Fln protein: MFFFPFYENGNLAQALHAKEWNPSVEQILTIIIQLARALQYLHKLGIVHRDVKPANILLDNKLEAHLADFGLAVYGKDLEKTTVQNWKSSGKPTGGFHKKNMVGTLIYMAPEVLKKEIHTEKSDIYSFAITINELVTGVVPYTDLQTEAQAHTVLEMTYTEQQLTAAITSEGLRPVLAAPESGLPSSLLSLIKLCWDDNPVQRPSIDFLVKRLESIIAQYKHEVLENKNRDVNTLLDANQQCPAPFNYNDQNQVDINWSYQGAITAEKIQSDDQFSVKKWIKTLAEHPVYHPTLSWGSFATCGRREMMEDTHFLLPHLGNEKHAFAFGIFDGHRGAAAAQFAVNAIPGILHSFGSFQSPSEALVNAFIRTDILFRNELELHWLYNKRST*

Protein Length: 391

Fln nts: ATCCACTGCAGAAGATCTGGACCGTTTTCATAAAGAATTGCAAATTTTATGCAAGTTGGATCATCCTAGCATAGCGAATTTGGTGGCAGCACATGCAAGACCCCCAAATTAC_-_ATGTTTTTCTTCCCCTTCTATGAGAATGGTAACTTGGCTCAAGCTTTGCATGCTAAGGAATGGAATCCCTCCGTGGAGCAAATATTGACAATAATAATACAACTAGCCAGGGCTTTGCAGTACCTTCATAAGCTTGGAATTGTCCATAGGGATGTCAAACCTGCAAATATTCTTCTTGACAACAAATTGGAAGCACACCTTGCGGATTTTGGATTGGCAGTCTATGGAAAAGATCTTGAAAAGACAACTGTACAAAATTGGAAGTCATCTGGGAAACCAACTGGGGGTTTCCATAAAAAGAACATGGTTGGAACACTTATTTATATGGCACCCGAAGTACTCAAAAAAGAAATACATACTGAGAAGTCAGATATATATAGTTTTGCAATCACAATCAATGAACTTGTGACAGGTGTTGTTCCTTACACTGACCTTCAGACTGAGGCTCAGGCTCACACAGTACTAGAAATGACTTATACTGAACAACAACTTACAGCAGCTATTACCTCTGAAGGATTGCGCCCAGTACTTGCTGCTCCAGAGTCAGGGCTCCCATCCAGTCTATTGTCACTAATAAAGCTATGCTGGGATGACAATCCTGTGCAGCGCCCTTCCATTGATTTTTTGGTTAAAAGATTGGAATCAATTATTGCCCAATATAAGCATGAGGTACTAGAAAATAAGAACAGAGATGTTAATACTCTTTTGGATGCAAACCAACAGTGTCCAGCTCCATTTAACTATAATGATCAAAATCAAGTGGATATCAATTGGTCATATCAGGGTGCAATAACGGCAGAGAAAATCCAATCCGATGATCAGTTTTCTGTTAAGAAATGGATTAAAACTTTAGCCGAACATCCTGTGTATCATCCAACATTATCATGGGGTTCATTTGCCACTTGTGGTAGGCGAGAAATGATGGAGGACACACACTTTTTGTTGCCTCATTTGGGAAATGAGAAACATGCCTTTGCATTTGGGATCTTTGATGGTCATCGAGGTGCTGCAGCTGCACAGTTTGCAGTAAATGCCATACCAGGAATTTTGCATTCATTTGGTTCATTCCAAAGCCCATCAGAAGCATTGGTGAATGCATTTATTAGAACAGACATCTTGTTTCGTAATGAACTGGAATTGCATTGGTTATACAACAAAAGGTCAACGTAAGGATTGGCACCCTGGTTGCACTGCTGCAGTAGCATTGATTGTAGAAAACAGAGTTTTCGTAGCAAATGCTGGTGACTGTAGGACAATTTTGTGCAGAAAAGGACATGCAGTTGCTCTTAGTAAGGACCATGTTGCAAGCTGCATGGAAGAAAGAGATAGAGTCATCAAAGCAGGGGGACAAGTTAAATGGCAAGTAGATACTTGGCGTGTTGGTTCAGCTGCTCTCCAGGTTACACGTTCCATTGGTGACGACGATGTGAAGCCAGCAGTAACTGCGGAGCCAGAAATTACAGAGACTCTATTATCAACAGATGATGAATTCTTGGTGATGGCAAGTGATGGACTTTGGGATACAATAAGCAATGAAGAAGTGATATCTCTTATGAAAGATACTGTTAAAGAACCCGGCATGTGCTCTAAAAGACTTGCAACCACGGCCGTGGAAAGAGGGAGTAAAGATAATGTAACAGTAATTGTTATATTTCTTCGTCCAGTTTCAACTGTAGAGCGAATCTACTGAATATCACTATAAAGTCCGAGTTAGCGAGGAACACAAGGCTTTTTTGCTTTTCTTAAGTTGATTTGATCTGATAATTTGGTGTTCAGGTCAGGCAATGTCATTTTTTGATTCCTTGACGTACTCGTCGTTCTATGTCTCCCGTTTAATTTATAGAAATAAGAGTAAAATTATTGATGAGCATTTTACTAAAAGGATCCTGCCTTTATTGTTTTAATGGTTTGAATAACAATAATATCGGATTTATCATGCGGCGAGAGATATCAAAATCTGAACTTTTTCTCAGGTTTTGTACAAAATAAAGAGGTTTGTATCTTGAGAGATTTGATCCCTTTCAGTGTATGATAGATCCGGTGTTAAGATGGATTAGATGGATACAATGTCATGTTTTTAGAATTATTATTATGTATATGTTTGAGATAAACTTCATAC

Fln Alignment:

sp_v1.1_unigene14711___SWGSFATCGRREMMEDTHFLLPHLGNEKHAFAFGIFDGHRGAAAAQFAVNAIPGILHSFGSFQSPSE-ALVNAFIRTDILFRN
A9NWY3_______________SYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLN

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
1516		14		85	0.993533
1517	85	14			0.993533
1522	16			83	0.994512
1523	16			83	0.994512
1524		83	16		0.994512
1529	16		83		0.994512
1530			83	16	0.994512
1532		16	83		0.994512
1533	83		16		0.994512
1535	16		83		0.994512
1536	83		16		0.994512
1537		83		16	0.994512
1540		16		66	0.988813
1585	87		12		0.992554
1586	12			87	0.992554
1587		12		87	0.992554
1588	87	12			0.992554
1590		87		12	0.992554
1591	87		12		0.992554
1592	87		12		0.992554
1594	87			12	0.992554
1598		12	87		0.992554
1600		12		87	0.992554
1601			87	12	0.992554
1602	87	12			0.992554
1715	87			12	0.992554
1716		87	12		0.992554
1717		87	12		0.992554
1718	87		12		0.992554
1733	12		87		0.992554
1745	77	22			0.999999
1746	77		11	11	0.968132
1750	77		22		0.999999
1751	88			11	0.923564
1753	88	11			0.923564
1754		11	77	11	0.968132
1756	77	11	11		0.968132
1757	88		11		0.923564
1758		11		77	0.968132
1762		11		88	0.923564
1765	88	11			0.923564
1766	11			88	0.923564
2003		81		18	0.999994
2034	88			11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain