SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14679

Length: 3202 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14679
ATGGGGGAGGCTTCTAGAGTGGGTATCCCCGCAGCGTCCATGTTGGCGAAAGAGAAAGTTTTCCCGACTCGTGCCCTCGAAACATTCATTTCTTATATAGCGCGGACAGGGAGCCGAACAGGTCCAGGAATCGATTTCTCTGGTTGGGTAGAGTTTCACAGGCAGAAGATTTTGGTGGTAAGGCGAAAATGAGCGTTGTAGGGTTTGATGTCGGAAACGAAAGCTGCATTGTTGCCGTTGCACGGCAGCGCGGCATTGATGTCGTGCTTAATGATGAATCGAAGAGGGAAACCCCGGCCATTGTCTGTTTCGGGGAGAAGCAGCGGTTTATTGGCACGGCCGGTGCCTCTTCGTCCCTGATGAATCCGAAGAACGCCGTCTCTCAGATCAAACGGTTGATCGGGAAGCAATTCCGTGATCCCGAAGTGCAGAGGGATTTGCAGAGCTTGCCGTTCACCGTCGATGAAGGGCCCGACGGGGGTGTGCGGATTCACGCGCGGTACCTTGGAGAGAATCGCGTCTTCAGCGCGACTCAGATTCTAGCCATGCTTTTGTCGAACCTTAAGCAAATTGCAAAGACAAATTTGAAAACAGAGGTTGTTGATTGTTGTATTGGGATACCAATTTATTTCACAGATCTCCAAAGAAGAGCGTTTTTGGATGCCGCTTCCATTGCGGGCCTAAATCCTCTCCGCTTGATGCACGAGACCACAGCCACTGCCTTGGCTTACGGCATTTACAAGACTGATCTGCCTGAAAATGATCCGTTGAACGTCGTGTTTGTTGATATCGGCCATGCTAGTATGCAGGTGTGTGTTGCTGCATTTAAAAAGGGCCAGTTGAAGATTCTGGCTCATACCTATGATAGATCTCTGGGTGGGAGGGATTTCGATGAGGTTCTTTTCAAGCATTTTGCTGATAAATTCAAGGAGCAATATCAGATAGACGTGCCAACTAATGTTCGAGCCAGTCAGAGATTGCGGGCTGCTTGCGAGAAGTTGAAGAAAGTCTTGAGTGCTAACCCTGAGGCACCTCTCAATATCGAGTGTTTAATGGATGAAAAAGACGTTAGGGGATTTATCAAACGGGACGAGTTTGAACAACTTGCACAACCGATGCTCGAGCGTGTGAAAGGGCCCTGCGTGCAGGCTTTGATTGAAGCAGGAATTACTGTAGATAAGATTCATGCGGTTGAAGTTGTTGGCTCGGGTTCTCGTGTTCCTGCAATATTAAAAATATTGACTGAGACTTTTGGAAAAGAACCGAGGCGGACTATGAATGCGAGCGAGTGTGTGGCTCGAGGATGTGCTCTCCAGTGTGCTATTCTTAGTCCGACATTCAAAGTGCGCGAATTCAAGGTTCAAGAAAGTTTTCCGTTCTCTATTGCTTTGGCGTGGAAGGATTCTGCTCCCGAGGCTGAAGATGGAACTTTAGAGCAACGGCAAACCAAAGTTGTGTTCCCTAGAGGCAACACATTGCCAAGTACAAAGGTTTTTACATTCTTAAGGTCTGGGACCTTCACAGTAGACATTTTATATGAAGATGTGAACCAAGTTCGGGCGCCTGCACTGATAAGTTCATACATGATTGGTCCTTTTCAGACTTCAAAAGGTGAAAAGGCTAAGCTGAAAGTAAGAGTCCAGTTGGATAAGCATGGAATAGTTTCGATTGATTCAGCAACTATGATTGAGGAAGAAGAAATAGAAGTCCCTGTTTCTAGTGTGAAAGAAGGATCAAATGACGAGAAAGAGACTGCTGCAATGGATACAGATGATGCACAAAACAATGGTGCATCTGCAGCTGGTGACAATGCTGATGTTAATATGCAGGATGCCAAAAATGCTGCTGGACCTGCAACAGCGGGAACTGCCACTGGTGCTGAAAATGGGATTCCTGAGGCAGAGGATAAAGCTGCCCAGATGGAGACTGATGCCAAGGCAAAAACTGTGAAAAAGAAGGTAAAGAAAACAGAGGTACCATTTAGTGAAAGAGTATTTGGGGCCATGCCACGGACAGATTTGCAGAAGGCTACTGATGAAGAATTTGAAATGGCTTTACAAGACCGAGTGATGGAAGAAACAAAGGAGAAAAAAAATGCAGTGGAAGCTTACGTTTATGACATGCGCAACAAGCTATATGAAAAATATCAGGCATATGTCACAGAGCCCCAGAGGGAGGAATTGACATCAAAGTTGCAGACAGTAGAAGACTGGTTGTATGATGAAGGAGAGGATGAAACAAAAGGTGTTTATGTTGCAAAGCTAGAAGAGCTCAAGAAGTTTGGTGATCCAATTGAGGAGAGGTACAAGGAGGATATGGAAAGAGGACGGGCAATCGATGAGCTTATATATTGTATTAATAGTTATAGAGAGGCAGCCCTTTCCAAAGACAAATTTGACCACATAGATATTGCTGATAAGCAGAAGGTTGTGAGCGAGTGTAGTGAAGCTGAATCCTGGCTATATGACAAAAGGCAACAGCAAGATTCCCTGCCAAAGCATGCCAATCCTATTGTTTTTGTAGCTGATATAAGAAGGAAAACGGAGACCTTGAACCGCTTTTGTAGGCCTATAATGACAAAGCCAAAACCGGCTCCTGCCAAGCCACCAACACAGTCATCACCACAACCTCAACCCTCTGCTGAAGCTCAGGCAAATGAGAATGCTAATAATGGTGCCACTCCAGAGGATCAAGCACCTCCGTCTGAGCCCATGGAGACGGACAATATTCAAACACCTGAATCCGAGTGACATGTCTGATTGTATTGTGTATGCTCTAGGAGTCTCCTGTTCACATTAATTATATCAGATACATTCATTTCTGATTGTCATTTTGTCTGGTTTCCAGCGTAGTTTTGTATTTCCTTCCCAAGGGAAGGATGAATAGATATGTTGCAAAATGTGAAGACGACAATGCATTTAACTCCATTTTATATTTTGGGATCTAGAAGTCTTGTTTTTAGAAGCGTTGACATTTAGTCGATAAATAGGTTGCTTCAGAGTCCCTGTCAACTCCTCTGTAAAACTTGGACACAAGAACATAATATGTTCTTAATCCATCCAGAATTTTCTCTTAGGCAACGCATGTAGTAAGTTTTTTGTATTTGGTTAGTAAAATTTTGGACAAAGGCAATCCTTGTGAAATCTTAATCTATATTGAGTATACTTATTTTTTAAGTTCAACCGACGAGCAATGTTTTCTA

Ace file of the UniGene sp_v1.1_unigene14679

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9SQC9_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	heat shock 70 kda protein 4	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	81%
Blast2go	protein folding	GO:0006457	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	response to heat	GO:0009408	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	0.0	81%
Blast2go	Heat shock protein 70	IPR013126	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQU3

Fln msg: your sequence is longer than subject: 854 - 388

Fln protein: MSVVGFDVGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGASSSLMNPKNAVSQIKRLIGKQFRDPEVQRDLQSLPFTVDEGPDGGVRIHARYLGENRVFSATQILAMLLSNLKQIAKTNLKTEVVDCCIGIPIYFTDLQRRAFLDAASIAGLNPLRLMHETTATALAYGIYKTDLPENDPLNVVFVDIGHASMQVCVAAFKKGQLKILAHTYDRSLGGRDFDEVLFKHFADKFKEQYQIDVPTNVRASQRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLAQPMLERVKGPCVQALIEAGITVDKIHAVEVVGSGSRVPAILKILTETFGKEPRRTMNASECVARGCALQCAILSPTFKVREFKVQESFPFSIALAWKDSAPEAEDGTLEQRQTKVVFPRGNTLPSTKVFTFLRSGTFTVDILYEDVNQVRAPALISSYMIGPFQTSKGEKAKLKVRVQLDKHGIVSIDSATMIEEEEIEVPVSSVKEGSNDEKETAAMDTDDAQNNGASAAGDNADVNMQDAKNAAGPATAGTATGAENGIPEAEDKAAQMETDAKAKTVKKKVKKTEVPFSERVFGAMPRTDLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTEPQREELTSKLQTVEDWLYDEGEDETKGVYVAKLEELKKFGDPIEERYKEDMERGRAIDELIYCINSYREAALSKDKFDHIDIADKQKVVSECSEAESWLYDKRQQQDSLPKHANPIVFVADIRRKTETLNRFCRPIMTKPKPAPAKPPTQSSPQPQPSAEAQANENANNGATPEDQAPPSEPMETDNIQTPESE*

Protein Length: 855

Fln nts: ATGGGGGAGGCTTCTAGAGTGGGTATCCCCGCAGCGTCCATGTTGGCGAAAGAGAAAGTTTTCCCGACTCGTGCCCTCGAAACATTCATTTCTTATATAGCGCGGACAGGGAGCCGAACAGGTCCAGGAATCGATTTCTCTGGTTGGGTAGAGTTTCACAGGCAGAAGATTTTGGTGGTAAGGCGAAA_-_ATGAGCGTTGTAGGGTTTGATGTCGGAAACGAAAGCTGCATTGTTGCCGTTGCACGGCAGCGCGGCATTGATGTCGTGCTTAATGATGAATCGAAGAGGGAAACCCCGGCCATTGTCTGTTTCGGGGAGAAGCAGCGGTTTATTGGCACGGCCGGTGCCTCTTCGTCCCTGATGAATCCGAAGAACGCCGTCTCTCAGATCAAACGGTTGATCGGGAAGCAATTCCGTGATCCCGAAGTGCAGAGGGATTTGCAGAGCTTGCCGTTCACCGTCGATGAAGGGCCCGACGGGGGTGTGCGGATTCACGCGCGGTACCTTGGAGAGAATCGCGTCTTCAGCGCGACTCAGATTCTAGCCATGCTTTTGTCGAACCTTAAGCAAATTGCAAAGACAAATTTGAAAACAGAGGTTGTTGATTGTTGTATTGGGATACCAATTTATTTCACAGATCTCCAAAGAAGAGCGTTTTTGGATGCCGCTTCCATTGCGGGCCTAAATCCTCTCCGCTTGATGCACGAGACCACAGCCACTGCCTTGGCTTACGGCATTTACAAGACTGATCTGCCTGAAAATGATCCGTTGAACGTCGTGTTTGTTGATATCGGCCATGCTAGTATGCAGGTGTGTGTTGCTGCATTTAAAAAGGGCCAGTTGAAGATTCTGGCTCATACCTATGATAGATCTCTGGGTGGGAGGGATTTCGATGAGGTTCTTTTCAAGCATTTTGCTGATAAATTCAAGGAGCAATATCAGATAGACGTGCCAACTAATGTTCGAGCCAGTCAGAGATTGCGGGCTGCTTGCGAGAAGTTGAAGAAAGTCTTGAGTGCTAACCCTGAGGCACCTCTCAATATCGAGTGTTTAATGGATGAAAAAGACGTTAGGGGATTTATCAAACGGGACGAGTTTGAACAACTTGCACAACCGATGCTCGAGCGTGTGAAAGGGCCCTGCGTGCAGGCTTTGATTGAAGCAGGAATTACTGTAGATAAGATTCATGCGGTTGAAGTTGTTGGCTCGGGTTCTCGTGTTCCTGCAATATTAAAAATATTGACTGAGACTTTTGGAAAAGAACCGAGGCGGACTATGAATGCGAGCGAGTGTGTGGCTCGAGGATGTGCTCTCCAGTGTGCTATTCTTAGTCCGACATTCAAAGTGCGCGAATTCAAGGTTCAAGAAAGTTTTCCGTTCTCTATTGCTTTGGCGTGGAAGGATTCTGCTCCCGAGGCTGAAGATGGAACTTTAGAGCAACGGCAAACCAAAGTTGTGTTCCCTAGAGGCAACACATTGCCAAGTACAAAGGTTTTTACATTCTTAAGGTCTGGGACCTTCACAGTAGACATTTTATATGAAGATGTGAACCAAGTTCGGGCGCCTGCACTGATAAGTTCATACATGATTGGTCCTTTTCAGACTTCAAAAGGTGAAAAGGCTAAGCTGAAAGTAAGAGTCCAGTTGGATAAGCATGGAATAGTTTCGATTGATTCAGCAACTATGATTGAGGAAGAAGAAATAGAAGTCCCTGTTTCTAGTGTGAAAGAAGGATCAAATGACGAGAAAGAGACTGCTGCAATGGATACAGATGATGCACAAAACAATGGTGCATCTGCAGCTGGTGACAATGCTGATGTTAATATGCAGGATGCCAAAAATGCTGCTGGACCTGCAACAGCGGGAACTGCCACTGGTGCTGAAAATGGGATTCCTGAGGCAGAGGATAAAGCTGCCCAGATGGAGACTGATGCCAAGGCAAAAACTGTGAAAAAGAAGGTAAAGAAAACAGAGGTACCATTTAGTGAAAGAGTATTTGGGGCCATGCCACGGACAGATTTGCAGAAGGCTACTGATGAAGAATTTGAAATGGCTTTACAAGACCGAGTGATGGAAGAAACAAAGGAGAAAAAAAATGCAGTGGAAGCTTACGTTTATGACATGCGCAACAAGCTATATGAAAAATATCAGGCATATGTCACAGAGCCCCAGAGGGAGGAATTGACATCAAAGTTGCAGACAGTAGAAGACTGGTTGTATGATGAAGGAGAGGATGAAACAAAAGGTGTTTATGTTGCAAAGCTAGAAGAGCTCAAGAAGTTTGGTGATCCAATTGAGGAGAGGTACAAGGAGGATATGGAAAGAGGACGGGCAATCGATGAGCTTATATATTGTATTAATAGTTATAGAGAGGCAGCCCTTTCCAAAGACAAATTTGACCACATAGATATTGCTGATAAGCAGAAGGTTGTGAGCGAGTGTAGTGAAGCTGAATCCTGGCTATATGACAAAAGGCAACAGCAAGATTCCCTGCCAAAGCATGCCAATCCTATTGTTTTTGTAGCTGATATAAGAAGGAAAACGGAGACCTTGAACCGCTTTTGTAGGCCTATAATGACAAAGCCAAAACCGGCTCCTGCCAAGCCACCAACACAGTCATCACCACAACCTCAACCCTCTGCTGAAGCTCAGGCAAATGAGAATGCTAATAATGGTGCCACTCCAGAGGATCAAGCACCTCCGTCTGAGCCCATGGAGACGGACAATATTCAAACACCTGAATCCGAGTGA___CATGTCTGATTGTATTGTGTATGCTCTAGGAGTCTCCTGTTCACATTAATTATATCAGATACATTCATTTCTGATTGTCATTTTGTCTGGTTTCCAGCGTAGTTTTGTATTTCCTTCCCAAGGGAAGGATGAATAGATATGTTGCAAAATGTGAAGACGACAATGCATTTAACTCCATTTTATATTTTGGGATCTAGAAGTCTTGTTTTTAGAAGCGTTGACATTTAGTCGATAAATAGGTTGCTTCAGAGTCCCTGTCAACTCCTCTGTAAAACTTGGACACAAGAACATAATATGTTCTTAATCCATCCAGAATTTTCTCTTAGGCAACGCATGTAGTAAGTTTTTTGTATTTGGTTAGTAAAATTTTGGACAAAGGCAATCCTTGTGAAATCTTAATCTATATTGAGTATACTTATTTTTTAAGTTCAACCGACGAGCAATGTTTTCTA

Fln Alignment:

sp_v1.1_unigene14679___MIGPFQTSKGEKAKLKVRVQLDKHGIVSIDSATMXXXXXXXVPVSSVKEGSNDEKETAAMDTXXXXXXXXXXXXXXXXXXMQDAKNXXXXXXXXXXXXXENGIPEAEDKAAQMETDXXXXXXXXXXXXX-EVPFSERVFGAMPRTDLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTEPQREELTSKLQTVEDWLYDEGEDETKGVYVAKLEELKKFGDPIEERYKEDMERGRAIDELIYCINSYREAALSKDKFDHIDIADKQKVVSECSEAESWLYDKRQQQDSLPKHANPIVFVADIRRKTETLNRFCRPIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATPEDQAPPSEPMETDNIQTPESE
C0PQU3_______________MIGPFQTSKGEKAKLKVRVQLDKHGIVFVDSATMIEEEEIEVPVSSGKEGSKEDKETAAMETDDAQNNGASAAGDNADVNMQDAKSAAGTATAGTSGA-ENGFPEAEDKAAQMETDAKVKTVRKKKVKKTEVPINEKIFGALPRADLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTESQREELTLKLQTVEDWLYDEGEDETKGVYIAKLEELKKFGDPIEERYKEDMERGRSIDELMYCINSYRTAALSKDKYDHIDIADKQKVVSECSEAETWLSDKKQQQDSLPKHANPLVLVADIRRKTETLDRFCRPIMTKPRPAPAKPPTQSPTQPQPSAEAQANENATNGATPEDQAPPAEPMETDNIQTPESE

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
75	50		50		1.0
78		50	50		1.0
79		50	50		1.0
82		83	16		0.994512
93	12			87	0.992554
94	20		10	70	0.999998
95			20	80	0.999996
96		70	30		1.0
97	10		20	70	0.999998
98			20	80	0.999996
169			90	10	0.90298
170	90	10			0.90298
476		88	11		0.923564
477		88		11	0.923564
481			88	11	0.923564
482			88	11	0.923564
485		11	88		0.923564
489	11		88		0.923564
491		11	88		0.923564
492	11		88		0.923564
911	12		87		0.992554
993		12		87	0.992554
1121		15		84	0.999986
1248		25		75	0.996473
1297	14		85		0.993533
1302			16	83	0.994512
1750	95		4		0.995881
1874		75		18	1.0
1878		83		16	0.999991
1897		85		14	0.993533
2115		90		10	0.90298
2172		88		11	0.923564
2180	88			11	0.923564
2532		7		92	0.999602
2565			4	95	0.995482
2566			4	95	0.995482
2693	96		4		0.99411
3090		6	93		1.0
3180	80		20		0.999996
3181			80	20	0.999996
3183	11	33		55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain