SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14664

Length: 810 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14664

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	pentatricopeptide repeat-containing protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 257 - 370

Fln protein: VVTLAVTQKLYFDSMSYYGVETRLEHCVCMVDLFGRAGLLGEAENFINNMVLQPDALIWRTLLGACRVHGNINLGKRVGNRLLELEPHNAATYVLLSNMYASAGRWDDKENVRDMMEKRRVKKDPGCSWINIQNKVHTFVIGDRSHPQTEEIYAYLESLTKQMKEIGYAPDTKSAFHDTK*EINKSFVGQGSERLAIVFGLMHTFPGKPILVMENLxxxHNAIKYMSKIAGQEIIVRDANSFHHFREGLCTCGDYW*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAATTATACTTCGATTCCATGTCTTACTATGGAGTTGAAACCAGACTGGAGCACTGTGTGTGCATGGTTGATCTTTTTGGCCGTGCTGGGCTCCTGGGCGAGGCAGAAAACTTTATCAATAACATGGTTCTTCAACCTGATGCTCTGATTTGGCGAACCTTGCTCGGTGCCTGCAGAGTCCATGGGAATATAAATTTAGGAAAGCGGGTAGGAAATCGCCTCCTTGAGTTGGAACCGCATAATGCTGCAACTTATGTTCTCCTGTCAAACATGTATGCTTCGGCAGGCAGGTGGGATGATAAGGAAAATGTTAGAGATATGATGGAGAAAAGGCGGGTGAAAAAAGATCCTGGGTGCAGTTGGATTAATATTCAGAACAAGGTTCATACTTTTGTCATAGGAGATAGATCACACCCACAAACAGAGGAAATTTATGCATACTTGGAGAGTTTGACAAAGCAGATGAAAGAGATAGGGTATGCGCCTGATACAAAGTCTGCTTTCCATGACACAAAATAGGAAATAAATAAATCATTTGTTGGTCAGGGCAGTGAGAGATTGGCTATTGTGTTTGGCCTGATGCACACATTCCCCGGAAAGCCCATCCTTGTAATGGAAAACCTGxxxxxxxxxCACAATGCTATCAAATACATGTCTAAGATTGCTGGGCAAGAAATTATTGTGAGGGACGCCAATAGCTTTCATCACTTCAGAGAAGGTTTGTGTACCTGTGGAGATTATTGGTGACGTAACGTGAAATAATTGGGGCATTTCAGCATTTTATCC

Fln Alignment:

sp_v1.1_unigene14664___YFDSMSY-YGVETRLEHCVCMVDLFGRAGLLGEAENFINNMVLQPDALIWRTLLGACRVHGNINLGKRVGNRLLELEPHNAATYVLLSNMYASAGRWDDKENVRDMMEKRRVKKDPGCSWINIQNKVHTFVIGDRSHPQTEEIYAYLESLTKQMKEIGYAPDTKSAFHDTK*EINKSFVGQGSERLAIVFGLMHTFPGKPILVMENLRIxxDCHNAIKYMSKIAGQEIIVRDANSFHHFREGLCTCGDYW
A9P0W0_______________YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVxxDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain