SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14648

Length: 1243 nt

Origin of reads: Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14648 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 4 n=1 Tax=Litchi chinensis RepID=B7UCP4_LITCN	-	-	45%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	47%
Blast2go	peroxidase	-	-	64%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	64%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	64%
Blast2go	Haem peroxidase	IPR010255	-	64%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5W5I4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 29 aas, your sequence is shorter than subject: 297 - 353

Fln protein: SLPTPKQGMDYTFYDDTCPQAEEIVRSRIKYFIEENISKAAGLLRLFHHDCFIKGCDGSVLLRGSTGGPWDLAAAPDQSLSPEAFAIIDDIKTNLEAVCPQVVSCADIVALAARDAVLAAKGPYFPIPTGRRDSRTLDTAEDIVNSMPQPTWNVSLLLKNFKSRGLDVVDLVALSGAHTIGEAHCASFANRLRPLDPRMSKKLVKNLLQICPTVESTNKTALNRKSPKEFDHKYYKNLMKNDGLLTSDEDLFYDARTRELVKVFKDSGFAFFLQFAMSAIKMSQLGVSPAQRERLG*

Protein Length: 298

Fln nts: GATCATTGCCAACGCCAAAGCAGGGAATGGACTACACCTTCTACGATGACACCTGCCCACAGGCAGAAGAGATAGTAAGATCTCGGATTAAATATTTCATTGAAGAGAACATCTCCAAGGCCGCAGGATTGCTACGATTATTCCACCATGATTGTTTTATAAAGGGATGTGATGGATCAGTATTGCTGAGAGGCTCTACAGGCGGTCCCTGGGATTTAGCTGCAGCACCTGATCAATCTCTGAGTCCAGAGGCTTTCGCAATAATCGATGACATTAAAACAAATTTGGAAGCAGTATGCCCTCAAGTTGTTTCCTGTGCAGATATTGTTGCTCTAGCAGCCAGAGATGCCGTTCTTGCAGCTAAGGGACCATATTTTCCCATCCCAACCGGTCGCAGAGACAGCAGAACATTGGACACAGCAGAAGACATTGTTAACAGCATGCCTCAACCCACTTGGAACGTTTCTCTGCTGCTCAAAAACTTTAAGTCCAGGGGATTGGATGTCGTAGATCTGGTTGCTCTCTCAGGAGCACACACCATAGGGGAAGCTCACTGCGCTTCCTTCGCCAACAGGCTCCGTCCCCTGGACCCTCGGATGAGTAAAAAGCTCGTGAAGAATCTGCTGCAGATTTGCCCCACGGTCGAATCCACTAACAAGACTGCACTGAACCGCAAAAGTCCTAAGGAATTTGATCACAAATATTACAAAAACCTGATGAAGAACGACGGCCTTTTAACTTCAGATGAAGATCTGTTCTACGATGCCCGAACCAGGGAGCTTGTGAAGGTATTCAAGGATTCTGGGTTCGCATTCTTCCTTCAATTTGCCATGTCTGCCATAAAAATGAGCCAGTTGGGTGTCTCACCGGCACAGAGGGAGAGATTAGGGTGA___ATTGCTGGGAGCCCAATCATATAGAGCCAATTTCATCACCTGCACCGGAGCCCGCTGCTTTCTATCCATCTGCGCCTGCACCTGACATGATTCCTACTCCAGCAGAATCCAGTACATTATATTCGCTCCAGTATGGGTATTTGAATGTAATGGAGTAAATTCAGTCTTCTATCGTAATCTGATACAGTCGGGCGATAAATAAATAGTAAATCCATGGACTCAGGTGAAAATCAGGGCCATATATTGTGTTTGGTTCTGTGCTGATCGCATTTTCCCAAATATGCAGAATTCTGAGCTTTATAAATTTACAGAGGTGTGGGCTACCGTTATATATATTATTGTATTGCTAA

Fln Alignment:

sp_v1.1_unigene14648___PTPKQGMDYTFYDDTCPQAEEIVRSRIKYFIEENISKAAGLLRLFHHDCFIKGCDGSVLLRGSTGGPWDLAAAPDQSLSPEAFAIIDDIKTNLEAVCPQVVSCXXXXXXXXXXXXXXAKGPYFPIPTGRRDSRTLDTAEDIVNSMPQPTWNVSLLLKNFKSRGLDVVDLVALSGAHTIGEAHCASFANRLRP-LDPRMSKKLVKNLLQICPTVESTNKTALNRKSPKEFDHKYYKNLMKNDGLLTSDEDLFYDARTRELVKVFKDSGFAFFLQFAMSAIKMSQLGV
Q5W5I4_______________PPLVNGLSWTFYKSSCPKLESIVKQRIDFYLKQDITQAAGLLRLHFHDCFVQGCDGSVLLAGSTSGPSEQGAPPNLSLRAKAFEIINDIKSRVDKACKVVVSCADVTALAAKESVRAAGGPQYRIPLGRRDSLKFATQNVTLANLPAPSSKVTTLIKAFATKNLNVTDLVALSGGHTIGIGHCTSFTDRLYPKQDTTLNKSFAQRLYTACPPKTSSNTTVLDIRTPNVFDNKYYVDLMNRQGLFTSDQDLYSDSRTKAIVNDFALDQDLFFEKFAVAMVKMGQLNV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1028	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain