SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14627

Length: 903 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14627 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing F-box family protein	-	-	4.0e-39	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	0.0	70%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTH7

Fln msg: Overlapping hits, possible frame ERROR between 452 and 446, your sequence is shorter than subject: 254 - 353

Fln protein: FPKGIPLFCHCVWVNQKLVMIGGWHPSNWKALNSVFIYDFASGTWRQGADMPRVRSFFACSVSPNGLIYVAGGHDDNKNALRVAEAYDVEEDKWEILPPMSQERDECQGVFMDGKFTVISGYATESQGRFEKSAEIYDPSTGLWSTLxxxxVHLGCHSGSCVMAFGRLYFFHKQQVMSYNSKENVWEVVASLPVGMQIVTCATVWRDKIFVSGSACSGADQLSYMFDNSGKWVPIERPQDFGGFVQSATSVEM*

Protein Length: 255

Fln nts: AATTTCCCAAAGGGATTCCCCTTTTCTGTCACTGTGTTTGGGTGAATCAGAAATTGGTTATGATTGGGGGATGGCATCCCTCCAACTGGAAGGCGTTGAACTCTGTTTTTATCTATGACTTTGCGTCCGGTACATGGCGCCAGGGAGCCGATATGCCCAGGGTTCGATCCTTTTTCGCCTGCTCTGTTTCACCCAATGGGCTTATTTATGTTGCCGGAGGACATGATGACAATAAAAACGCTCTGCGGGTTGCAGAGGCTTATGATGTGGAAGAAGACAAGTGGGAAATTCTGCCCCCAATGAGCCAAGAGCGAGACGAATGCCAGGGAGTCTTTATGGATGGAAAATTCACCGTGATAAGCGGGTATGCCACGGAGTCTCAGGGTCGATTCGAGAAGAGTGCGGAAATATATGATCCTAGTACAGGACTTTGGAGCACATTGxxxxxxxxxxxxGTGCACCTTGGCTGTCACTCAGGGTCGTGCGTGATGGCATTCGGGCGTCTGTATTTCTTCCATAAACAACAAGTGATGTCCTATAACAGTAAGGAGAACGTCTGGGAAGTGGTGGCATCTCTTCCTGTAGGGATGCAGATTGTTACTTGCGCAACAGTGTGGCGTGACAAGATATTCGTGAGCGGTTCTGCTTGCAGCGGTGCGGATCAACTGTCTTACATGTTCGACAACTCAGGGAAGTGGGTTCCCATTGAGAGGCCCCAAGACTTTGGGGGATTTGTTCAATCTGCAACATCGGTAGAGATGTGAGCTTCTTATGCTCACTGCACATAGTTTTGTAATTATTAGCATGCAGGGGGGATTATGTGAAAAAAGCACTGTACAGGGATAGGGCATAAGAATTCAGTTTCATGTGTGGGAACAATAATGCATTTGTGGAATTTCAAGAT

Fln Alignment:

sp_v1.1_unigene14627___FPKGIPLFCHCVWVNQKLVMIGGWHPSNWKALNSVFIYDFASGTWRQGADMPRVRSFFACSVSPNGLIYVAGGHDDNKNALRVAEAYDVEEDKWEILPPMSQERDECQGVFMDGKFTVISGYATESQGRFEKSAEIYDPSTGLWSTLxxxVHLGCHSGSCVMAFGRLYFFHKQQVMSYNSKENVWEVVASLPVGMQ-IVTCATVWRDKIFVSGSACSGADQLSYMFDNSGKWVPIERPQDFGGFVQSATSVEM
A9NTH7_______________FSGGIPLFCQCVCVNQKLFMIGGWHPSQWEAMKSVFIYDFPSRTWRRGADMPRVRSFFACSISPDGLIYVAGGHGDNKSALRAAEAYDVKHDRWEILPPMSQERDRCHGVFLDGKFTVISGYATESQGRFERSAEVFDPSTGVWSRVxxxWNIGGCPRSCVAALGHLYFFHNQHVMRYNGKENVWEVVASLPQCMDDVATCAAVWHDKIFVSGSTYKSGEQVCYMFDNSGKWVHIERPHDFVGFVQSAITVEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain