SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14607

Length: 2384 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14607
AACGTCGTGACCTTGGCTGTCACTCAGGTATGTGGGTCGATCTATAGCGGAAACTCTGTAAAAACCCTATTGAATTTCAATGGGGCAGGGCGCCTCGTCTTCTTCCGTGGTACACGCCTTAAAACGCGAAGAAAACGATGTGAATTTGGGCAGAGATTACAGCCTAAGCCTTCCGGATGAATGCCTGGCCTGCATCTTCTGTAGCATGAGCTCCGGCGACCGGCAGCGATGCTCTCTGGTGTGCAAGAGATGGTTTCTTGTCGAGGGTTCGAGTCGCCAGCGGCTATCCTTGGATGCCCGGTTGGATATCTCAGCGGCAATCCCAGGCCTCTTCAGCAGGTTCGATCATGTGACCAAGCTCGCTCTCAGGTGCGATCGCAGAATGGTAAGTATAAAAGACGAGGGCTTGATTAAAATTGGAATTCATTGTAAGAGCCTTAAAAAGTTGAAATTGAAGGCCTGTAGGGAGTTATCTGATGTGGGTATCGAGGATTTTGCTAAGCTGTGTACTGGTCTGAAAAAATTGTCGTGTGGGTCTTGTACTTTTGGGGCAAAGGGGATGAATGCTGTTCTTAAGTATTGTGTAGGGTTAGAGGAGTTGTCTGTTAAGCGGTTGAGGGGTTTAGCTGACGGGAGTGTCGATGTTATCGGCCCCGGGTGTGCGATGTTGAAGAGTATTTGCCTGAAGGAACTTTTTAACGGGCAGTATTTTGGACCCCTGATTGCTGGATCGAAGAACCTGCGTACCCTCAAGCTGTTTCGATGTTCAGGGGATTGGGATAAGCTGCTTGAGGTGATCACTGATCATGTGACTGGATTGGTTGAGGTGCATCTCGAGAGGTTGCAGGTAAGCGATCGCGGCCTGATGGCCGTTTCGAGGTGCGCAGGATTGGAGGTCTTGCATCTGGTGAAGACTCCGGAGTGCACGAACGTCGGGCTTGCGGCGATCGCCAACAACTGCAAAAATCTAAGGAAGTTGCATATAGATGGTTGGAAAACGAATCGGATAGGCGATGAGGGGCTTATTGCCGTGGGGAAAAAGTGTCAAAATTTGCAGGAGTTGGTGTTGATTGGCTTGAATCTGACTGCAACGAGCTTGAGTCCTCTGGCTTCCAATTGCCAGGTCTTGGAGAGGTTGGCTCTCTGTGGCAGTGAGACGATCGGGGATACGGAGATCTCTTGTATCGCTGCGAAGTGTCTTTCTTTGAAGAAGCTGTGCATCAAGGGTTGTCCAGTTTCGGATGATGGGATCGAGTCCTTGGTCAGTGGGTGTCCAAAGTTGGTGAAGGTGAAGGTGAAGAAATGCAGAGGGGTTACTTGGGAGGGCGCGGATCGTTTGAGGGCGAATAGAGGATCTTTGGCTGTTAACTTGGATACGCCGTTGCCGAATCCAGTTGTTGGTACACTTTCGGGAGCTGGTGCCGCTGAAGCTAGTGCCCCTTCAACCAGCAAATCATCAATAGCCAAGGCAAAGTTTTCTCTCTTTGCTGGAAGAAACCTTGTGGCCTGTGCTTTTCTGAGATTGTCAAATGGATCCGATGGAGATCATAAACGAGTGTCTGCAAATGCATGAGTTGTTTATCCTATTGGAAAAACAAGGCCAAGTCATGTTATTAAGCTCTGCTGGAGTTGCTTTACTGCTCATGGATCTTTTGGCATAGTGTTTCCTGATGCACGGTGCAGATATATGACTTGGCATCTAGATCAGGTAATACTAATAATGGAGCAGGAAAACATTGTTTGCAATGGGCTATTTGCGTTAAGGTTTTCTTGTGTGCTAAGCAGTTAGTCAATCTGGCTGTTGAACATGTTCTTCCAAAGAACATAAACCACTTGTATGCGGTGGACATCCGATGTTTGGCTTTGTCTTATTGGATGCGTCGTGGAGTTAGTTCCTTTGTCCATTGAACAATATTCCTTAAGGGACTGAGTTGACTTGTTTGCAATGGAATGTGCACAGCCAGGCTTTCAGATGAAAGCCCTGTCGGCTGTACAGGTAGGTAGTTTCTGGACAAAGTAGATCTCTGGGTTGTCAGCTTGAGATTCTATTAAATACTTTAAGTCCTGTGCTGTAATTTCAGTGCAATGCAACAGAATCTGTGAAGGGATGGAATTAATTTGTGCAATGTTGGCAAAATAATCAATATGCATTTGTCATACATAATGTCTAAAAGAGCTCTCGTTTCTGATAGAAACAGTATATTTGAAATGGGTATGTGTGCAGCGGCCAGCCACACTTTCAGATGAATCTTTCTTTGTTATACCAGTAAACAGTTATTAAGTCTAGTAAAAAGGAGATCACCAGATTTTTGTCAAATGTTTAATTAAGTTGTTTGCTGTAAGTTCTTCAGTAGATCCAATATAATCTGCACAAGGTTGGAACT

Ace file of the UniGene sp_v1.1_unigene14607

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	f-box family protein	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	70%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	70%
Blast2go	cytoplasm	GO:0005737	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	70%
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUV1

Fln msg:

Fln protein: MGQGASSSSVVHALKREENDVNLGRDYSLSLPDECLACIFCSMSSGDRQRCSLVCKRWFLVEGSSRQRLSLDARLDISAAIPGLFSRFDHVTKLALRCDRRMVSIKDEGLIKIGIHCKSLKKLKLKACRELSDVGIEDFAKLCTGLKKLSCGSCTFGAKGMNAVLKYCVGLEELSVKRLRGLADGSVDVIGPGCAMLKSICLKELFNGQYFGPLIAGSKNLRTLKLFRCSGDWDKLLEVITDHVTGLVEVHLERLQVSDRGLMAVSRCAGLEVLHLVKTPECTNVGLAAIANNCKNLRKLHIDGWKTNRIGDEGLIAVGKKCQNLQELVLIGLNLTATSLSPLASNCQVLERLALCGSETIGDTEISCIAAKCLSLKKLCIKGCPVSDDGIESLVSGCPKLVKVKVKKCRGVTWEGADRLRANRGSLAVNLDTPLPNPVVGTLSGAGAAEASAPSTSKSSIAKAKFSLFAGRNLVACAFLRLSNGSDGDHKRVSANA*

Protein Length: 499

Fln nts: AACGTCGTGACCTTGGCTGTCACTCAGGTATGTGGGTCGATCTATAGCGGAAACTCTGTAAAAACCCTATTGAATTTCA_-_ATGGGGCAGGGCGCCTCGTCTTCTTCCGTGGTACACGCCTTAAAACGCGAAGAAAACGATGTGAATTTGGGCAGAGATTACAGCCTAAGCCTTCCGGATGAATGCCTGGCCTGCATCTTCTGTAGCATGAGCTCCGGCGACCGGCAGCGATGCTCTCTGGTGTGCAAGAGATGGTTTCTTGTCGAGGGTTCGAGTCGCCAGCGGCTATCCTTGGATGCCCGGTTGGATATCTCAGCGGCAATCCCAGGCCTCTTCAGCAGGTTCGATCATGTGACCAAGCTCGCTCTCAGGTGCGATCGCAGAATGGTAAGTATAAAAGACGAGGGCTTGATTAAAATTGGAATTCATTGTAAGAGCCTTAAAAAGTTGAAATTGAAGGCCTGTAGGGAGTTATCTGATGTGGGTATCGAGGATTTTGCTAAGCTGTGTACTGGTCTGAAAAAATTGTCGTGTGGGTCTTGTACTTTTGGGGCAAAGGGGATGAATGCTGTTCTTAAGTATTGTGTAGGGTTAGAGGAGTTGTCTGTTAAGCGGTTGAGGGGTTTAGCTGACGGGAGTGTCGATGTTATCGGCCCCGGGTGTGCGATGTTGAAGAGTATTTGCCTGAAGGAACTTTTTAACGGGCAGTATTTTGGACCCCTGATTGCTGGATCGAAGAACCTGCGTACCCTCAAGCTGTTTCGATGTTCAGGGGATTGGGATAAGCTGCTTGAGGTGATCACTGATCATGTGACTGGATTGGTTGAGGTGCATCTCGAGAGGTTGCAGGTAAGCGATCGCGGCCTGATGGCCGTTTCGAGGTGCGCAGGATTGGAGGTCTTGCATCTGGTGAAGACTCCGGAGTGCACGAACGTCGGGCTTGCGGCGATCGCCAACAACTGCAAAAATCTAAGGAAGTTGCATATAGATGGTTGGAAAACGAATCGGATAGGCGATGAGGGGCTTATTGCCGTGGGGAAAAAGTGTCAAAATTTGCAGGAGTTGGTGTTGATTGGCTTGAATCTGACTGCAACGAGCTTGAGTCCTCTGGCTTCCAATTGCCAGGTCTTGGAGAGGTTGGCTCTCTGTGGCAGTGAGACGATCGGGGATACGGAGATCTCTTGTATCGCTGCGAAGTGTCTTTCTTTGAAGAAGCTGTGCATCAAGGGTTGTCCAGTTTCGGATGATGGGATCGAGTCCTTGGTCAGTGGGTGTCCAAAGTTGGTGAAGGTGAAGGTGAAGAAATGCAGAGGGGTTACTTGGGAGGGCGCGGATCGTTTGAGGGCGAATAGAGGATCTTTGGCTGTTAACTTGGATACGCCGTTGCCGAATCCAGTTGTTGGTACACTTTCGGGAGCTGGTGCCGCTGAAGCTAGTGCCCCTTCAACCAGCAAATCATCAATAGCCAAGGCAAAGTTTTCTCTCTTTGCTGGAAGAAACCTTGTGGCCTGTGCTTTTCTGAGATTGTCAAATGGATCCGATGGAGATCATAAACGAGTGTCTGCAAATGCATGA___GTTGTTTATCCTATTGGAAAAACAAGGCCAAGTCATGTTATTAAGCTCTGCTGGAGTTGCTTTACTGCTCATGGATCTTTTGGCATAGTGTTTCCTGATGCACGGTGCAGATATATGACTTGGCATCTAGATCAGGTAATACTAATAATGGAGCAGGAAAACATTGTTTGCAATGGGCTATTTGCGTTAAGGTTTTCTTGTGTGCTAAGCAGTTAGTCAATCTGGCTGTTGAACATGTTCTTCCAAAGAACATAAACCACTTGTATGCGGTGGACATCCGATGTTTGGCTTTGTCTTATTGGATGCGTCGTGGAGTTAGTTCCTTTGTCCATTGAACAATATTCCTTAAGGGACTGAGTTGACTTGTTTGCAATGGAATGTGCACAGCCAGGCTTTCAGATGAAAGCCCTGTCGGCTGTACAGGTAGGTAGTTTCTGGACAAAGTAGATCTCTGGGTTGTCAGCTTGAGATTCTATTAAATACTTTAAGTCCTGTGCTGTAATTTCAGTGCAATGCAACAGAATCTGTGAAGGGATGGAATTAATTTGTGCAATGTTGGCAAAATAATCAATATGCATTTGTCATACATAATGTCTAAAAGAGCTCTCGTTTCTGATAGAAACAGTATATTTGAAATGGGTATGTGTGCAGCGGCCAGCCACACTTTCAGATGAATCTTTCTTTGTTATACCAGTAAACAGTTATTAAGTCTAGTAAAAAGGAGATCACCAGATTTTTGTCAAATGTTTAATTAAGTTGTTTGCTGTAAGTTCTTCAGTAGATCCAATATAATCTGCACAAGGTTGGAACT

Fln Alignment:

sp_v1.1_unigene14607___MGQGASSSS------VVHALKREENDVNLGRDYSLSLPDECLACIFCSMSSGDRQRCSLVCKRWFLVEGSSRQRLSLDARLDISAAIPGLFSRFDHVTKLALRCDRRMVSIKDEGLIKIGIHCXXXXXXXXXACRELSDVGIEDFAKLCTGLKKLSCGSCTFGAKGMNAVLKYCVGLEELSVKRLRGLADGSVDVIGPGCAMLKSICLKELFNGQYFGPLIAGSKNLRTLKLFRCSGDWDKLLEVITDHVTGLVEVHLERLQVSDRGLMAVSRCAGLEVLHLVKTPECTNVGLAAIANNCKNLRKLHIDGWKTNRIGDEGLIAVGKKCQNLQELVLIGLNLTATSLSPLASNCQVLERLALCGSETIGDTEISCIAAKCLSLKKLCIKGCPVSDDGIESLVSGCPXXXXXXXXXCRGVTWEGADRLRANRGSLAVNLD
A9NUV1_______________MGQSNSSLSPPPMGLFLENSEVERFDVYPEQDLIVYLPDECLASIFQKLTNEDRNACSLVCSRWHRIESKSRQRLVLMARTELSSLLPALFMRFEHVTVLSLKCSRKFPSIDNKALSLIGKSFTHLKKIKLKGCIEITDEGLESFSLVCGPIKKFSCGSCGFGGKGLNSILKNCNELEDLTAKRLRRL-DGQTERIGPGKGKLQRLCLKDIYNGQLFAPLLSGSKCLRTLILSRNSGYWDQMLESSTENLQQLTELQIESMHLGDRGLMAVSKCSKLEVFYMSRVSDCTDRGIYAVANGCRRLRKVHLDSGKSKRIGEQGLLSIATKCPQLQELVLMGIATSVVSLNALASHCPVLERMALCNSDSVGDLEMSCISAKFIALKKLCIKNCPISDDGLVTIAGGCPSLIKLKVKRCKGVTSKSVCQVQTKRGSLIVAVD

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
6		33	66		0.997452
7	66		33		0.997452
11	66	33			0.997452
12		33	66		0.997452
13	66			33	0.997452
17		33	66		0.997452
19			33	66	0.997452
20	66			33	0.997452
21	66	33			0.997452
25			66	33	0.997452
26		33	66		0.997452
27	20	20		60	0.99255
28	20		80		0.995493
136	90		10		0.90298
814	15		84		0.999986
1209	14			85	0.993533
1362		25		75	0.996473
1596	14		85		0.993533
1598	85		14		0.993533
1618	11			88	0.923564
1620	88		11		0.923564
1621			11	88	0.923564
1622			11	88	0.923564
1658		11		88	0.923564
1698	90		10		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
1282	1300	GGTGAA GGTGAA GGTGAA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain