SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14588

Length: 3078 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14588
CGTCGTGACCTTGGCTGTCACTCAATTATTTTTATTCTTCCACATACGTCGTGATTGGTTGTCAGTGAATTTCCGGCTCATTCATTCCTTCCTTTGCTCATTCTTCCGTCTTTCTTGTCTGGCTCGATTGGGATTCATTGTCCCCTTGGCCTTTGGTTGCGGAGGAGGAGAACGACGAGGTTTACAGTCTTCCCACGAACTCCAACTCTGGAACTCCAGATTGATTCTGTTGGATCGCTGTGTTCGCCTGGTCGAATCCCTTAAACCCTTGGGCTTTTCTGTTGACGCTGATCTCTGCTGTCTTGGGAGGCTGCCTGATTTGCGTCCTAGTTCGTTCATAGAAGGTCCCTGGTTTGCTCATCGGTTCTCCTTTGTATTGTTATTTGCGAAATGGATCTTCCGAGCTTGGCCGTTATCCTGCAGGCGGCGCTCAGTCCCAACCCTCAAGAGAGAAAGGCGGCAGAGGAGAGCCTCAATCAGTATCAGTACACACCTCAGCATCTTGTCAGACTTCTACATATAATAGTTGATGGAAGCTGTGATTTGGCTGTACGTCAAGTTGCAAGTATCCATTTCAAGAATTTTATAGGCAAAAATTGGGCACCTCATGAGCCTGGTGAGCAGCAGAAGATATCACCAGCTGATAAGGCCACGGTTAGAGAAAATTTGCTTGAGTTCATTGTTCGAGTTCCTTCTTTGTTGAGAGTGCAGCTAGGTGAGTGCCTTAAAACTATTATTAATGCAGACTATCCAGAGCATTGGCCTGCCCTCCTTACCTGGGTCAAGCGTAAATTTCAAGAACAGCAAGTATATGGTGCTTTATATGTGCTGAGAATTCTTTCAAGGAAGTACGAGTTCAAGTCAGAGGATGAGCGAACTCCTGTATATCTTATCATTGACGAAGCTTTTCCACCTTTACTTGACATTTTCAACCGCCTTGTGCAAATTCCGAGCCCTACAATAGAGATAGCAGAGCTGATCAAACTCATCTGCAAAATCTTCTGGTCATCCATATATCTAGAGGTCCCTAAGCAACTGTTTGATCCCAATGTCTTTAATGCTTGGATGGTCCTATTTTTAGCTATGCTGGAAAGGCCAGTTCCTACTGAGGGACAGCCAACTGACCCAGAACAACGGAAGTCTTGGGAATGGTGGAAAGTAAAGAAGTGGACCGTGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTACGAAAGGACATGACATAACACAAAATCTGTATAGTCCTCGCACTGCATCCATTGATTTCATCACTGAGCTGGTTCGGAAACGTGGAAAAGAAAACCTCCAGAAATTCCTCACTTTTATTGTTGAAGTTTTTAGGAGGTATGATGAGGCAGCTCCAGGCTACAAACTCTATAGGCAGAAAGATGGTGCGCTTTTGGCAGTTGGGGCTTTATGTGATAAACTGAAGCAGACAGAACCATACAAATCTCAACTGGAGCAAATGCTAGTGCAACATGTTTTTCCCGAGTTTAGGAGTCAAGTTGGTCACTTGAGAGCGAAGGCTGCATGGGTTGCAGGTCAGTATGCAAGTATCAACTTTGCAGATCAGAGAAATTTCAGTGCAGCCTTACATAGTGTTGTAGCGGGTTTGCGAGATCCTGAGCTGCCAGTACGTGTAGATTCTGTATTTGCTCTTAGATCTTTTGTGGAGGCTTGCAAGGATTTGAATGAAATTAGGCCAATCTTACCACAACTGCTTGATGAGTTTTTCAAACTTATGAATGAAGTTGAGAATGAAGATCTTGTGTTCACTCTGGAAACTATTGTGGATAAGTTTGGGGAGGAGATGGCACCTTATGCCTTAGGGTTATGCCAGAATCTGGCTGCTGCATTTTGGAAGTGTATGCAATCTGCTGAAGCTGAGGAAGACCTAGATGAATCAGGTGCATTGGCTGCTGTTGGATGCTTGCGTGCCATAAGTACAATACTTGAATCTGTCAGCAGGCTTCCCCACCTTTTCCCTCAGGTGGAGCCTATTTTATTGCCCATCATGCAGAGGATGCTTACAACTGATGGTCAAGAGGTTTTTGAGGAGGTTTTGGAGATTGTATCTTACATGACATACTTCTCAGAGACCATTTCTTTGGAAATGTGGAGTCTTTGGCCTCTCATGATAAATGCATTGGATGATTGGGCTATAGATTTCTTTGAAAATATTCTCGTCCCATTGGATAATTACATATCTAGGAGCACTGAACATTTTCTTACATGCAAGGACCCTGACTACCAACAAAGTCTCTTTAAAGTGCTTTCCTCTGTAATGACAGATAAAAATATTGAAGATCATGATATTGAGCCAGCTCCCAAGCTTGTAGAAGCAGTGTTACAGAATTGTAAAGGTCGAGTTGATCATTGGGTTGAACCTTATCTTAGAATTACAATTGACAGGCTACGTCGAACTGAAAAGAAGTATTTGAAGGATTTGTTGCTTGAAGTGATTGCCAATGCTTTATACTACAACCCACAGCTGACTCTTAACATTCTGCAAAAATTGGGAGTAGCTACCGAAGTTTTCAATCTGTGGTTTCATATGCTTCAAGAAGTAAAGAAAAGTGGTCAGAAAGCGAATTTTAGAAGAGAGCATGACAAGAAAGTTTGCATTTTGGGGCTGACTTCACTCTTAACACTTCCTTCTGAACTTTTACCTGAAGAATCCTTTCGTCAAATATTCAGAGCTGTACTTGATCTGCTTGTTGCATATAAGGAGCAAGTTGCTGAAACAGCAAAGAATAATGAAGATGAAGATGATGAC

Ace file of the UniGene sp_v1.1_unigene14588

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Importin-7, putative n=2 Tax=rosids RepID=B9SP38_RICCO	-	-	78%
FL-Next	sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	24%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	85%
Blast2go	binding	GO:0005488	Molecular Function	85%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%
Blast2go	nuclear pore	GO:0005643	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Importin-beta, N-terminal	IPR001494	-	85%
Blast2go	Armadillo-like helical	IPR011989	-	85%
Blast2go	Exportin/Importin, Cse1-like	IPR013713	-	85%
Blast2go	Armadillo-type fold	IPR016024	-	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZPY7

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 896 - 972

Fln protein: MDLPSLAVILQAALSPNPQERKAAEESLNQYQYTPQHLVRLLHIIVDGSCDLAVRQVASIHFKNFIGKNWAPHEPGEQQKISPADKATVRENLLEFIVRVPSLLRVQLGECLKTIINADYPEHWPALLTWVKRKFQEQQVYGALYVLRILSRKYEFKSEDERTPVYLIIDEAFPPLLDIFNRLVQIPSPTIEIAELIKLICKIFWSSIYLEVPKQLFDPNVFNAWMVLFLAMLERPVPTEGQPTDPEQRKSWEWWKVKKWTVHIMNRLYTRFGDPKLLKPENKPFAEMFQKHYAGKILECHLNLLNVIRQGGYLPDRVTNLVLQYLSSSISKSNTYQLLKPELDIVLFEIIFPLMCFNDNDEKLWREDPHEYVTKGHDITQNLYSPRTASIDFITELVRKRGKENLQKFLTFIVEVFRRYDEAAPGYKLYRQKDGALLAVGALCDKLKQTEPYKSQLEQMLVQHVFPEFRSQVGHLRAKAAWVAGQYASINFADQRNFSAALHSVVAGLRDPELPVRVDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMQSAEAEEDLDESGALAAVGCLRAISTILESVSRLPHLFPQVEPILLPIMQRMLTTDGQEVFEEVLEIVSYMTYFSETISLEMWSLWPLMINALDDWAIDFFENILVPLDNYISRSTEHFLTCKDPDYQQSLFKVLSSVMTDKNIEDHDIEPAPKLVEAVLQNCKGRVDHWVEPYLRITIDRLRRTEKKYLKDLLLEVIANALYYNPQLTLNILQKLGVATEVFNLWFHMLQEVKKSGQKANFRREHDKKVCILGLTSLLTLPSELLPEESFRQIFRAVLDLLVAYKEQVAETAKNNEDEDDD

Protein Length: 897

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTTTTATTCTTCCACATACGTCGTGATTGGTTGTCAGTGAATTTCCGGCTCATTCATTCCTTCCTTTGCTCATTCTTCCGTCTTTCTTGTCTGGCTCGATTGGGATTCATTGTCCCCTTGGCCTTTGGTTGCGGAGGAGGAGAACGACGAGGTTTACAGTCTTCCCACGAACTCCAACTCTGGAACTCCAGATTGATTCTGTTGGATCGCTGTGTTCGCCTGGTCGAATCCCTTAAACCCTTGGGCTTTTCTGTTGACGCTGATCTCTGCTGTCTTGGGAGGCTGCCTGATTTGCGTCCTAGTTCGTTCATAGAAGGTCCCTGGTTTGCTCATCGGTTCTCCTTTGTATTGTTATTTGCGAA_-_ATGGATCTTCCGAGCTTGGCCGTTATCCTGCAGGCGGCGCTCAGTCCCAACCCTCAAGAGAGAAAGGCGGCAGAGGAGAGCCTCAATCAGTATCAGTACACACCTCAGCATCTTGTCAGACTTCTACATATAATAGTTGATGGAAGCTGTGATTTGGCTGTACGTCAAGTTGCAAGTATCCATTTCAAGAATTTTATAGGCAAAAATTGGGCACCTCATGAGCCTGGTGAGCAGCAGAAGATATCACCAGCTGATAAGGCCACGGTTAGAGAAAATTTGCTTGAGTTCATTGTTCGAGTTCCTTCTTTGTTGAGAGTGCAGCTAGGTGAGTGCCTTAAAACTATTATTAATGCAGACTATCCAGAGCATTGGCCTGCCCTCCTTACCTGGGTCAAGCGTAAATTTCAAGAACAGCAAGTATATGGTGCTTTATATGTGCTGAGAATTCTTTCAAGGAAGTACGAGTTCAAGTCAGAGGATGAGCGAACTCCTGTATATCTTATCATTGACGAAGCTTTTCCACCTTTACTTGACATTTTCAACCGCCTTGTGCAAATTCCGAGCCCTACAATAGAGATAGCAGAGCTGATCAAACTCATCTGCAAAATCTTCTGGTCATCCATATATCTAGAGGTCCCTAAGCAACTGTTTGATCCCAATGTCTTTAATGCTTGGATGGTCCTATTTTTAGCTATGCTGGAAAGGCCAGTTCCTACTGAGGGACAGCCAACTGACCCAGAACAACGGAAGTCTTGGGAATGGTGGAAAGTAAAGAAGTGGACCGTGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTACGAAAGGACATGACATAACACAAAATCTGTATAGTCCTCGCACTGCATCCATTGATTTCATCACTGAGCTGGTTCGGAAACGTGGAAAAGAAAACCTCCAGAAATTCCTCACTTTTATTGTTGAAGTTTTTAGGAGGTATGATGAGGCAGCTCCAGGCTACAAACTCTATAGGCAGAAAGATGGTGCGCTTTTGGCAGTTGGGGCTTTATGTGATAAACTGAAGCAGACAGAACCATACAAATCTCAACTGGAGCAAATGCTAGTGCAACATGTTTTTCCCGAGTTTAGGAGTCAAGTTGGTCACTTGAGAGCGAAGGCTGCATGGGTTGCAGGTCAGTATGCAAGTATCAACTTTGCAGATCAGAGAAATTTCAGTGCAGCCTTACATAGTGTTGTAGCGGGTTTGCGAGATCCTGAGCTGCCAGTACGTGTAGATTCTGTATTTGCTCTTAGATCTTTTGTGGAGGCTTGCAAGGATTTGAATGAAATTAGGCCAATCTTACCACAACTGCTTGATGAGTTTTTCAAACTTATGAATGAAGTTGAGAATGAAGATCTTGTGTTCACTCTGGAAACTATTGTGGATAAGTTTGGGGAGGAGATGGCACCTTATGCCTTAGGGTTATGCCAGAATCTGGCTGCTGCATTTTGGAAGTGTATGCAATCTGCTGAAGCTGAGGAAGACCTAGATGAATCAGGTGCATTGGCTGCTGTTGGATGCTTGCGTGCCATAAGTACAATACTTGAATCTGTCAGCAGGCTTCCCCACCTTTTCCCTCAGGTGGAGCCTATTTTATTGCCCATCATGCAGAGGATGCTTACAACTGATGGTCAAGAGGTTTTTGAGGAGGTTTTGGAGATTGTATCTTACATGACATACTTCTCAGAGACCATTTCTTTGGAAATGTGGAGTCTTTGGCCTCTCATGATAAATGCATTGGATGATTGGGCTATAGATTTCTTTGAAAATATTCTCGTCCCATTGGATAATTACATATCTAGGAGCACTGAACATTTTCTTACATGCAAGGACCCTGACTACCAACAAAGTCTCTTTAAAGTGCTTTCCTCTGTAATGACAGATAAAAATATTGAAGATCATGATATTGAGCCAGCTCCCAAGCTTGTAGAAGCAGTGTTACAGAATTGTAAAGGTCGAGTTGATCATTGGGTTGAACCTTATCTTAGAATTACAATTGACAGGCTACGTCGAACTGAAAAGAAGTATTTGAAGGATTTGTTGCTTGAAGTGATTGCCAATGCTTTATACTACAACCCACAGCTGACTCTTAACATTCTGCAAAAATTGGGAGTAGCTACCGAAGTTTTCAATCTGTGGTTTCATATGCTTCAAGAAGTAAAGAAAAGTGGTCAGAAAGCGAATTTTAGAAGAGAGCATGACAAGAAAGTTTGCATTTTGGGGCTGACTTCACTCTTAACACTTCCTTCTGAACTTTTACCTGAAGAATCCTTTCGTCAAATATTCAGAGCTGTACTTGATCTGCTTGTTGCATATAAGGAGCAAGTTGCTGAAACAGCAAAGAATAATGAAGATGAAGATGATGAC

Fln Alignment:

sp_v1.1_unigene14588___LSPNPQERKAAEESLNQYQYTPQHLVRLLHIIVDGSCDLAVRQVASIHFKNFIGKNWAPHEPGEQQKISPADKATVRENLLEFIVRVPSLLRVQLGECLKTIINADYPEHWPALLTWVKRKFQEQ-------QVYGALYVLRILSRK--YEFKSEDERTPVYLIIDEAFPPLLDIFNRLVQI--------PSPTI--EIAELIKLICKIFWSSIYLEVPKQLFDPNVFNAWMVLFLAMLERPVP
Q9ZPY7_______________LSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTRHAAAVNFKNHLRSRWHPAGDSGISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPKAWPALLPELIANLQNAALAGDYVSVNGILGTASSIFKKFSYEYRTDALFVDLKYCLDNFAAPLTEIFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFYSLNFQDLPE--FFEDHMKEWMGEFKKYLSSNYP

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
256		83		16	0.994512
320			41	58	1.0
391		44		55	1.0
504	72			27	1.0
507		27		72	1.0
508	27			72	1.0
511		72	27		1.0
514	50			20	1.0
515		50	50		1.0
517			30	70	1.0
518			30	70	1.0
520		30		70	1.0
1082	16			83	0.994512
1084			16	83	0.994512
1085	83		16		0.994512
1189		20		80	0.995493
1210	14			85	0.993533
1214	85		14		0.993533
1491		83		16	0.994512
1513			16	83	0.994512
1739	80		20		0.995493
2749	12			87	0.992554
2752	87		12		0.992554
2753	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain