SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14570

Length: 954 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14570

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kelch repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RLL7_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	73%
Blast2go	Kelch repeat type 2	IPR011498	-	73%
Blast2go	Kelch-type beta propeller	IPR015915	-	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 171 aas, your sequence is shorter than subject: 317 - 665

Fln protein: ERA*SEDSFCLSLIIYSLSSGRMRWERVKIKTKGGEEPDAKKSPGRKGGGLGPGERWGHTCNTLRNGRSFYVFGGYGKDNCQTNDVHIFDPNKQTWTKPILKGNFPTPRDSHSCTTVGSCLFVFGGTDGQNPLRDLVILDTATNSWTQPDVQGEGPAAREGHSAALIGHRLFIFGGRRKTQEEEEIYYNDLYILDTTNLTWTKAVTSGKPPSPRDSHTCSSWNNKIIVVGGEDALGSYLSDVHVIDADTLVWEQIKTTGQILTPRAGHSTVSLGKYLFVFGGFTDDRYLFDDLHILNIETGAWSEAVTDGLGPSARF

Protein Length: 318

Fln nts: GGGAGAGGGCGTGATCAGAAGATAGTTTCTGCCTCAGTCTTATCATTTATTCATTAAGTTCGGGAAGAATGAGGTGGGAAAGGGTGAAGATTAAGACAAAAGGTGGAGAGGAGCCAGACGCCAAAAAGTCTCCTGGCAGGAAAGGTGGCGGGTTGGGTCCAGGCGAGAGATGGGGGCACACATGCAACACTCTCAGGAATGGCCGTTCTTTCTATGTTTTCGGAGGCTACGGGAAGGACAATTGCCAGACAAATGACGTTCACATTTTTGACCCGAACAAACAAACGTGGACGAAGCCAATATTGAAAGGAAATTTTCCTACTCCGAGGGATAGCCACAGTTGTACAACTGTTGGATCATGTCTGTTTGTTTTTGGTGGCACTGATGGGCAGAATCCTCTTAGAGACCTGGTCATACTTGATACAGCTACAAACTCATGGACGCAACCTGACGTACAGGGTGAAGGACCAGCAGCTCGAGAGGGGCATAGTGCTGCTCTTATTGGCCATCGTCTATTTATCTTTGGAGGACGTCGGAAAACTCAAGAAGAAGAAGAGATTTATTACAATGACCTTTATATTTTGGATACAACTAACTTGACCTGGACAAAAGCTGTGACAAGTGGTAAACCACCATCTCCACGTGATAGCCATACCTGTTCATCATGGAACAACAAAATTATAGTGGTTGGCGGTGAAGATGCATTGGGTTCGTATCTGTCTGATGTCCATGTCATTGATGCAGATACTCTTGTCTGGGAACAGATTAAAACAACTGGCCAAATTCTGACACCACGAGCAGGCCATTCTACAGTCTCTTTGGGAAAATATTTGTTTGTCTTTGGTGGTTTCACTGATGATCGCTACTTATTTGATGATTTACATATACTAAACATAGAGACTGGTGCATGGTCCGAAGCAGTTACCGATGGCCTAGGCCCTTCTGCCAGATTTT

Fln Alignment:

sp_v1.1_unigene14570___GRSFYVFGGYGKDNCQTNDVHIFDPNKQTWTKPILKGNFPTPRDSHSCTTVGSCLFVFGGTDG-QNPLRDLVILDTATNSWTQPDVQGEGPAAREGHSAALIGHR-LFIFGGRRKTQEEEEIYYNDLYILDTTNLTWTKAVTSGKPPSPRDSHTCSSWNNKIIVVGGEDALGSYLSDVHVIDADTLVWEQIKTT-GQILTPRAGHSTVSLGK----YLFVFGGFTDDRYLFDDLHIL
C0PPX6_______________GNKILAVAGHTKDPSDIVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMTWDAIEAVGTPPSPRSDHTATVHANRYLLIFGG-----GSHSTCFNDLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVTIGENWYIVGGGDN-KSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVVTSNNGEDILVAFGGY-NGRY-SNEVHVL

SSRs (tot: 1)

Start position	End position	Sequence	Length
544	556	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain