SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14567

Length: 1252 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14567

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	68%
Blast2go	heme binding	GO:0020037	Molecular Function	68%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	68%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	68%
Blast2go	membrane	GO:0016020	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	68%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	68%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS63

Fln msg: your sequence is shorter than subject: 330 - 526

Fln protein: KFTDDDLGGDFGSFKDLIVELISTVGAFNIGDFIPCLDWLDLQGIKGRMKKMHNAFNAFAEQILDDHVAHRMASSTSNQQKEEEPYVKDFVDVLIEKAEADSKMTRETVKAVVLDMLAGGLETTSTTLEWAMSELLRNPHVMKSLQEEIECVVGKDRKVKESDVATMKYLHCVLKETLRLYPPAAIAIPHESIEAVTVGRYHIPKKTMLIANVWAIGRDPNVWGADACEYKPERFMKDEHVNSTDQSDFSMIPFSAGRRGCPGAPMAIPTIELTLARLVHIFNWRVEGDPSQLDMTEVCGASIPRQVPLFAYPTLRVSFPLYYSSDAKG*

Protein Length: 331

Fln nts: AAATTTACTGACGATGACTTGGGTGGGGATTTCGGAAGTTTTAAGGATTTAATAGTAGAGCTGATATCTACAGTAGGAGCTTTTAACATCGGAGACTTTATTCCTTGTCTGGATTGGCTTGATCTGCAAGGTATCAAAGGGCGCATGAAGAAGATGCATAACGCATTCAATGCATTTGCAGAGCAAATATTAGACGACCACGTTGCTCATCGCATGGCGTCGTCGACCTCGAATCAGCAGAAAGAGGAAGAGCCCTATGTAAAAGATTTCGTCGATGTATTGATCGAGAAAGCTGAGGCCGACTCCAAAATGACGCGGGAAACTGTCAAGGCTGTCGTGCTTGACATGCTCGCAGGTGGTTTGGAGACGACATCGACTACCTTAGAATGGGCAATGAGTGAGCTGCTCAGAAATCCCCATGTGATGAAGAGTTTGCAAGAAGAAATCGAATGTGTCGTCGGCAAAGATCGAAAAGTGAAAGAATCTGATGTAGCAACCATGAAATACCTCCATTGCGTGCTGAAAGAGACGCTAAGATTATACCCACCTGCGGCGATAGCGATTCCTCATGAATCTATAGAGGCTGTGACAGTCGGAAGATACCATATCCCTAAGAAAACAATGTTGATTGCGAATGTGTGGGCTATAGGAAGGGATCCCAATGTGTGGGGGGCAGATGCTTGCGAATACAAGCCGGAAAGATTCATGAAGGATGAACATGTCAATTCAACAGATCAATCAGACTTCAGTATGATTCCGTTTAGTGCAGGAAGGAGAGGATGCCCAGGGGCACCCATGGCAATTCCCACGATTGAACTCACATTGGCTCGGCTGGTGCACATTTTTAACTGGAGAGTTGAAGGTGATCCGTCCCAGCTCGACATGACGGAAGTGTGCGGAGCCTCGATTCCAAGGCAAGTTCCGCTGTTTGCTTATCCAACGTTAAGGGTAAGCTTTCCACTCTATTACAGTTCTGACGCCAAAGGGTAA___GATTTCCACTCTAGTACATTTACGAAGCCTAACAGTGGCAAGGCACCGTACCGCTTTCCTATTTTCGCGACAATGCTTTCGCTACATGCTCTTCTAGTTTGTACCATTGCTTTCGCTGCTCGCCTTTCCAAAATTGTTTAGCTTTTGCAATTAGCTTTTGCAATTTCTGTTCCATATCAGGTGGGCAGAAGATTAGTCCTGTATTTTTCCGTCCAAATATTAATCAGTATAAGACTATTTTCGTTTGTGTTACAAGCTTTGC

Fln Alignment:

sp_v1.1_unigene14567___KFTDDDLGGDFGSFKDLIVELISTVGAFNIGDFIPCLDWLDLQGIKGRMKKMHNAFNAFAEQILDDHVA--HRMASSTSNQQKEE-EPYVKDFVDVLIEKAEADSKMTRETVKAVVLDMLAGGLETTSTTLEWAMSELLRNPHVMKSLQEEIECVVGKDRKVKESDVATMKYLHCVLKETLRLYPPAAIAIPHESIEAVTVGRYHIPKKTMLIANVWAIGRDPNVWGADACEYKPERFMKDEHVNSTDQSDFSMIPFSAGRRGCPGAPMAIPTIELTLARLVHIFNWRVEGDPSQLDMTEVCGASIPRQVPLFAYPTLRVSFPL
C0PS63_______________KFSDDDLGGDFKGFKDLLVELTARVGDFNIGDFIPYLDWLDLQGISRCMKKIHKTFDEFAEKIIDDHVNVNHLMAAASNGQKRADAEPHVQDFVDVLLHMAVTNTKITRKTIKALVLDMFAGGLETTSTTLEWAMSELLRHPNVMKRLQEEIDSIVGHHGKVKESDLATMKYLHCVVKETLRLYPAVPLAIPHESVEAVTVGGYYIPKKATVMVNVWAIGRDPNVWGAYASDFKPERFMENEHINLTDQSDFSMIPFGSGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSRLDMKEACGLTIPRQVPLCAYPSLRVSFPL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
212	33		66		0.997452
251	66	33			0.997452
294		33		66	0.997452
300		33	66		1.0
308	66		33		0.997452
349		66	33		0.997452
351		66	33		0.997452
356		33	66		0.997452
418		75		25	0.996473
429			50	50	1.0
456		33	66		1.0
459		33		66	0.997452
477			33	66	1.0
490			66	33	0.997452
497		33	66		1.0
507		66		33	0.997452
534	33	66			1.0
547		33	66		1.0
551		66		33	0.997452
554		66		33	0.997452
699	66		33		0.997452
730	66		33		0.997452
1114		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain