SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14545

Length: 1830 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14545

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein	-	-	1.0e-31	36%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	37%
Blast2go	protein	-	-	0.0	49%

Source	InterPros	Term	Type	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	49%
Blast2go	Kelch repeat type 1	IPR006652	-	49%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8S5A4

Fln msg:

Fln protein: MLPWLSLKSRVQNKLLGIGYRIRGLKSLKRLRLRLRRRLKTVSPGQWRKFAQKELPAKSAEFCNTSNSEFEGNGLSIFPGLPNDLGLQCLARVPRFYHSSLRAVSRAWRHSIDSCEFLEQRKLLGCSEDWLYLHIGTSPHLDERSQGKRVRWQLIGGYSQWHALDPQRCRWYALPPIPYDRALTGGQVILGAASAVLQGKLYVIGGAPFDKAAIRDVWMYDPRKNKWRRMTSMSTPRFGCLVGVIDNKLYVVGGSGMCHMTCYSLPCLEAYDPITNTWRYASSAGGAIADNPYNPLKHVAVVDGNLCVIGPQSLRGRMNGGMYDPVTDTWSEIKPGLLEGWGKPNTVMDGKLYIIDYSGYKQYIPEDDRWVPVMCRPEDFLLGWDPRLILTMSSSKEKIYLVGTMGSALFAMIVPVKNGKISQNIRWHTLMLPNGIDFLGSMGHCTCQILGY*

Protein Length: 454

Fln nts: TTTCCAATAAGTAACTGACCAACACCATCTGAAATGTATTCATAAAAGCAGATAACCAGGAAAGCTAGTTCACAGAAGGCTGAGCCTTATTTGAGCCTGTTTAAGAATGGGAACCGTTGTTTC_-_ATGCTGCCTTGGCTGTCACTCAAGTCACGGGTTCAAAACAAGTTGCTCGGTATTGGGTACAGAATCCGTGGGCTAAAGTCTTTAAAACGGCTTCGGCTTCGGCTTCGCAGAAGACTCAAGACTGTAAGTCCAGGTCAGTGGAGAAAGTTTGCCCAGAAAGAGCTGCCGGCAAAGAGCGCCGAATTCTGTAATACGTCCAACTCAGAGTTTGAAGGCAATGGCTTAAGTATTTTTCCAGGATTGCCAAATGATTTAGGATTACAATGTCTAGCAAGGGTTCCTCGTTTCTATCATTCTAGTCTTCGTGCTGTATCCAGAGCATGGCGCCATTCAATTGATAGCTGCGAGTTCTTGGAGCAACGGAAGCTGCTTGGCTGCTCTGAGGACTGGCTTTATCTTCATATTGGAACGTCACCGCACTTGGATGAGAGGAGCCAAGGTAAGAGAGTGAGATGGCAACTTATTGGTGGTTACAGCCAGTGGCATGCACTAGATCCACAGAGATGTAGGTGGTACGCACTTCCTCCAATACCCTATGATCGAGCTCTGACTGGAGGGCAAGTAATTTTGGGTGCCGCATCAGCAGTCTTGCAAGGAAAGCTTTATGTGATTGGCGGTGCTCCATTTGATAAAGCAGCAATAAGGGATGTGTGGATGTATGATCCAAGGAAGAACAAGTGGAGAAGGATGACATCCATGTCAACTCCTCGTTTTGGTTGCCTCGTAGGAGTAATTGACAACAAACTGTATGTAGTTGGAGGGTCTGGTATGTGCCATATGACATGCTATTCCCTCCCTTGCTTGGAAGCTTATGATCCCATTACAAACACATGGAGGTATGCATCAAGTGCAGGAGGTGCCATTGCTGACAATCCTTATAATCCTCTTAAACATGTAGCAGTGGTAGATGGCAATTTATGTGTAATAGGACCACAGAGCCTTAGAGGTCGTATGAATGGGGGCATGTACGATCCCGTTACAGATACATGGTCCGAAATAAAGCCGGGTTTACTGGAAGGATGGGGAAAGCCAAATACGGTTATGGATGGTAAGCTCTATATTATTGATTATAGTGGCTATAAGCAATATATTCCAGAAGATGATCGCTGGGTGCCTGTAATGTGTCGGCCTGAAGATTTTCTTTTGGGTTGGGATCCAAGATTGATTTTAACAATGTCAAGCAGCAAAGAAAAGATTTACTTGGTGGGTACTATGGGGTCTGCACTGTTCGCCATGATTGTTCCTGTAAAGAATGGGAAGATCAGTCAAAATATCAGATGGCATACATTGATGCTTCCAAACGGTATAGATTTTTTAGGTAGCATGGGGCATTGTACTTGCCAGATTCTTGGTTATTAA___TGCGCATTAAATGCAATACTCATTACCAAGCCTCATTTCAAAATTTGTATATCCTCACCTTCTACTGTTCCCAATCAGGGTTGTGCTTTCCCACTTTCTGTTTTCTTGCAAGTCTCTTCACGCTCTGGGATTGTGCTTGGGAGATCAAATGTAGAATCCTCAAGATCCTTGGCACTATTTGGAAGAGATGCTTTTTGATTTCATATGGCCAATACCATATGTATTATGGTATTGTGCTGTATGTTGGAAGAATGATGTGCATACCCATCTGTAATAATTGCAAATAAACTGTGTGTAGACACTCGTTTGATAATAGTCAAAGTTGTCTCTCAACTCTCTAACTAAAAA

Fln Alignment:

sp_v1.1_unigene14545___IFPGLPNDLGLQCLARVPRFYHSSLRAVSRAWRHSIDSCEFLEQRKLLGCSEDWLYLHIGTSPHLDERSQGKRVRWQLIGGYSQWHALDPQRCRWYALPPIPYDRALTGGQVILGAASAVLQG-KLYVIGGAPFDKAAIRDVWMYDPRKNKWRRMTSMSTPR--FGCLVGVIDNKLYVVGGSGMCHMTCYSLPCLEAYDPITNTWRYASSAGGAIADNPYNPLKHVAVV-DGNLCVIGPQSLRGRMNGGMYDPVTDTWSEIKPGLLEGWGKPNTVMDGKLYIID
D8S5A4_______________LIPGLPDDLAIACLVRVPRIHHRTLRVVCKRWYRLLAGNFFYSQRKALGMAEEWIYVI-------------KRDR----DGHISWHAFDPRYQQWQPLPPVPLEYC-----EALGFGCAVLSGCHLYLFGGKDPAKGSMRRVVYYSARTNKWHRAPDMNRRRHFFGCC--VINNCLYVAGGE--CEGVQRSLRSAEVYDPNKNRWSY-------IADMSTAMVPFIGVVYHGRWFLKGLGSHRQVMS-EVYVPATDNWSPVLDGMVSGWRNPSAIFNGQLYALD

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
124	75		25		0.996473
126		25	75		0.996473
127		75	25		0.996473
133	66			33	0.997452
134	66			33	0.997452
135	66		33		0.997452
136	66		33		0.997452
137	66	33			0.997452
184	33	66			1.0
186	33		66		1.0
193	33		66		1.0
263	66			33	1.0
276			33	66	1.0
306	50		50		1.0
461	16		83		0.999991
486		20	80		0.999996
494	11		88		0.923564
531	22		77		0.999999
554			22	77	0.999999
700			75	25	0.996473
757	40	60			1.0
768	50	50			1.0
819	75		25		0.996473
1002		83		16	0.994512
1048	20		80		0.995493
1052	75		25		0.996473
1053	75		25		0.996473
1248	83		16		0.994512
1277		28		71	1.0
1301	85		14		0.993533
1302	85			14	0.993533
1303		14		85	0.993533
1306		85	14		0.993533
1308	85	14			0.993533
1309			85	14	0.993533
1310		57		42	1.0
1311	85		14		0.993533
1314	80			20	0.995493
1315	80		20		0.995493
1316	80			20	0.995493
1317		20	80		0.995493
1319	80	20			0.995493
1320	80			20	0.995493
1321	80	20			0.995493
1322	20		80		0.995493
1342		40		60	1.0
1346	40		60		1.0
1349		20		80	0.995493
1356	40			60	1.0
1358		60		40	1.0
1374	40		60		1.0
1390		40		60	1.0
1406	85	14			0.993533
1409			85	14	0.993533
1413	85	14			0.993533
1414	14	85			0.993533
1430		83		16	0.994512
1460			16	83	0.994512
1505	16	83			0.994512
1506		83		16	0.994512
1518		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
211	230	CGGCTT CGGCTT CGGCTT CG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain