SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14500

Length: 1159 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14500

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ribosomal protein s6 family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	82%
Blast2go	rRNA binding	GO:0019843	Molecular Function	82%
Blast2go	ribosome	GO:0005840	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S6	IPR000529	-	0.0	82%
Blast2go	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
72	66		33		0.997452
73		66	33		0.997452
74			33	66	0.997452
75			33	66	0.997452
198	33		33	33	0.997753
200		66	33		0.997452
201	33		66		0.997452
202	33	33	33		0.997753
203			33	66	0.997452
204	66	33			0.997452
205	33			66	0.997452
272		90		9	0.999872
315	76		23		1.0
375	73		26		1.0
381	36		63		1.0
493	12	87			0.999964
606			75	25	0.996473
615	33		66		0.997452
632	66			33	0.997452
636	33		66		0.997452
639		33	66		0.997452
861	83		16		0.994512
863	83	16			0.994512
867		16		83	0.994512
868		16		83	0.994512
871			16	83	0.994512
872	16		16	16	0.988986
873	66	16		16	0.988813
875	83			16	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
292	303	CTG CTG CTG CTG	12
664	677	GAT GAT GAT GAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain