SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14461

Length: 1409 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14461

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xenotropic and polytropic murine leukemia virus receptor ids-4, putative n=1 Tax=Ricinus communis RepID=B9SES9_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	xenotropic and polytropic murine leukemia virus receptor ids-	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	0.0	64%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SPX, N-terminal	IPR004331	-	0.0	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: Distance to subject end: 56 aas, your sequence is longer than subject: 296 - 238

Fln protein: MKFGKRLKSQIEDTLPKWRDKFLAYKYLKKLVNSMSTAREASPSSGSDEIRGGSDERPNKRQKVSAGPVEAGAASDDYLPAFVIDFECNKRKMTAEESDFVDLLNAEIDKFNSFFMEQEEEYIIRQKELQDRIERLKSNSRQKGAVFSETEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGIAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLIRECENTLQSLFPDYPQSILQVPASPSSNGNHIETSASTGKSDSQRLRVPLAATTKEEFGEENALFKGRGDRRKG

Protein Length: 297

Fln nts: GAGATCTGAGCTTGGCATATTCTGAGATATATTCTGAGAATATTACGATGATGTGGTCGTTTGCGTCCACATTAAATGCTGCGACTTGTCTGAACATAAAGTGCTTTTTAATCCACCCTCGCCTCCAATTTTTCCTGGCAAACTACTGAACTTGTGACCAATTTTATGATTCTTGTTTGCTCTTTAATGTGAGCCCATGGTTTTTGCAGCTACAGTTTGTACTCTGAGGAAATTCCACTGGTTTTGGGGTTTCGACACTTATGACGATTCGAACTCGTGACCTTACCGCTTCTTGTTCTTGGTTGGATTTTTGGCTTTGGCGATGGATTTAGATCTTTAAATCTCCGTTTCTTGACTCTTGACGCTAGACAGCTATTTTCTTTGGTATTCTGGTTCCTTAGGCGGAAATGACTTCTTCTGGCCAAATGGAAACATTTCTCAGGCAGTGAGGCCTGCGGTATTATTGTAATTTGCAGAGTATAATTCTTTTGGGAGGAGGAGAACTCTTTGGCACTGAGATC_-_ATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGATACATTGCCAAAATGGCGAGATAAGTTCCTGGCTTATAAATACTTGAAGAAGCTCGTCAATTCTATGTCTACTGCAAGGGAGGCTTCGCCTTCCTCTGGTAGCGATGAGATCCGGGGCGGTTCCGATGAACGTCCCAACAAAAGGCAAAAGGTCTCTGCCGGACCTGTTGAAGCAGGCGCTGCTTCAGATGACTATCTACCCGCCTTTGTTATAGATTTCGAATGCAATAAGCGAAAAATGACTGCGGAGGAGTCTGACTTCGTTGATTTGCTGAATGCTGAGATCGACAAGTTTAATTCCTTCTTTATGGAGCAAGAAGAAGAATACATCATCCGTCAGAAGGAGCTGCAGGACAGGATCGAAAGGTTGAAGAGCAACAGTAGACAGAAGGGGGCAGTTTTCTCTGAAACCGAGTACAACGAAGAAATGATCAAATTGAGGAAAGACATTGTGAATTTTCATGGCGAGATGGTTCTGCTCGAGAATTACAGCGCTCTCAACTATACAGGGATTGCGAAGATTTTGAAGAAATATGACAAGAGAACGGGCGGGTTACTGCGCCATCCGTTCATTCAGAAGGTTCTGCAACAACCCTTTTTCACCACTGAACAACTCTCTAAGCTCATCAGAGAATGTGAGAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCATTCTTCAAGTACCTGCAAGTCCGTCCAGCAATGGAAACCATATAGAAACATCTGCTTCTACTGGTAAAAGCGATTCGCAGAGGCTACGAGTACCGCTGGCGGCAACGACCAAAGAGGAATTTGGGGAGGAGAATGCATTGTTTAAAGGCAGGGGGGATAGAAGGAaGGGG

Fln Alignment:

sp_v1.1_unigene14461___MEQEEEYIIRQKELQDRIERLKSNSRQKGAVFSETEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGIAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLIRECENTLQSLFPDYPQSILQVPASPSSNGNHIETSASTGKSDSQRLR-VPLAATTKEEFGEENALFKGRGD
B8LNU0_______________MEQEEEYIIRQKELQDRIEKLKSNSRQNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
241		75		25	0.996473
291		81	18		0.999994
327		10	90		0.90298
608			10	90	0.90298
613		10	90		0.90298
615	90		10		0.90298
660		20		80	0.995493
948			90	10	0.90298
1035		14		85	0.993533
1051		14		85	0.993533
1132		87	12		0.992554
1160	11			88	0.923564
1162			11	88	0.923564
1163			11	88	0.923564
1164			11	88	0.923564
1223		12		87	0.992554
1286	83		16		0.994512
1292	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain