SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14460

Length: 439 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene14460
GCTTACTTTCTTGAGCCTAGGAAAGAAAATAATACTAGAGCTTGAAGAAGGCATGAGAAAGCCTGGATATGTCCCCAATTCTGTTCAGAGGAAGCTTGCTGAAGAAGTGACTTGTTTCGTTCATGGTGAGGAAGGATTAAAGGAGGCCTTGAGGGCAACAGAGGCTCTGGCTCCTGGTTCAAAGACTCACTTAGATTGGAAAAGTATTGATGCCATTGCAAATGAAGTACCATCCTTCTTGTTGTCGTATGATGAGGTGCTGAATTCATCTCTGGTGGATTTATCTGTGAAAGCCGGGTTGCTGCCAACTAAAGCAGCAGTGAAGCGTCTCATAAGACAAGGAGGTCTCTACATGAATAACCAAAGAGTAGACAGCGAGGGGAAAATGATTGATGCAGCTGATATTGTTGATGACAAAATGTTGCTTCTATCAGCAGGC

Ace file of the UniGene sp_v1.1_unigene14460

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	65%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	75%
Blast2go	Tyrosine--tRNA ligase.	EC:6.1.1.1	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	75%
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	75%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	75%
Blast2go	tyrosyl-tRNA aminoacylation	GO:0006437	Biological Process	75%
Blast2go	RNA binding	GO:0003723	Molecular Function	75%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	tyrosine-tRNA ligase activity	GO:0004831	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tyrosyl-tRNA synthetase	IPR002307	-	0.0	75%
Blast2go	RNA-binding S4 domain	IPR002942	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B4FWY6

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 146 - 496

Fln protein: LTFLSLGKKIILELEEGMRKPGYVPNSVQRKLAEEVTCFVHGEEGLKEALRATEALAPGSKTHLDWKSIDAIANEVPSFLLSYDEVLNSSLVDLSVKAGLLPTKAAVKRLIRQGGLYMNNQRVDSEGKMIDAADIVDDKMLLLSAG

Protein Length: 147

Fln nts: GCTTACTTTCTTGAGCCTAGGAAAGAAAATAATACTAGAGCTTGAAGAAGGCATGAGAAAGCCTGGATATGTCCCCAATTCTGTTCAGAGGAAGCTTGCTGAAGAAGTGACTTGTTTCGTTCATGGTGAGGAAGGATTAAAGGAGGCCTTGAGGGCAACAGAGGCTCTGGCTCCTGGTTCAAAGACTCACTTAGATTGGAAAAGTATTGATGCCATTGCAAATGAAGTACCATCCTTCTTGTTGTCGTATGATGAGGTGCTGAATTCATCTCTGGTGGATTTATCTGTGAAAGCCGGGTTGCTGCCAACTAAAGCAGCAGTGAAGCGTCTCATAAGACAAGGAGGTCTCTACATGAATAACCAAAGAGTAGACAGCGAGGGGAAAATGATTGATGCAGCTGATATTGTTGATGACAAAATGTTGCTTCTATCAGCAGGC

Fln Alignment:

sp_v1.1_unigene14460___LTFLSLGKKIILELEEGMRKPGYVPNSVQRKLAEEVTCFVHGEEGLKEALRATEALAPGSKTHLDWKSIDAIANEVPSFLLSYDEVLNSSLVDLSVKAGLLPTKAAVKRLIRQGGLYMNNQRVDSEGKMIDAADIVDDKMLLLSAG
B4FWY6_______________LTFLSLDE--ILELEDSMKKPGYVPNTVQKRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDAQTIEGIADDVPSCSLAYDQVFKSPLIDLAVSTGLLTSKSAVKRLIKQGGLYLNNVRIDSEDKLVEEGDIVDGKVLLLSAG

SNPs (tot: 3)

Position	A %	C %	G %	Probability
159	66		33	0.997452
160		66	33	0.997452
161	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain