SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14441

Length: 1433 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14441 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydroflavonol 4-reductase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4D5_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	dihydroflavonol 4-reductase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	flavonoid biosynthetic process	GO:0009813	Biological Process	81%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	81%
Blast2go	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQE0

Fln msg:

Fln protein: MVLGEDNAQRPLQPPSIHELHRESTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDTGDPVKTKHLLELPGANERLILYKADMDEEGSFDAAIDGCEGVFHLATRTVFESRDPENEVIRPAVNGLLNVMRSCAKAKSVKRVVFTSSVGAMKFTDDYGTPGKIYDETCWTNVELCTRLKITGWIYFASKTLAERAAWEFAEKNNIDLISIIPPLVVGPFISQTMPPSMKTALALLTRNEPHYAILRQAHLVHLDDLCVSHIFLYEHPEAKGRYISSSDETTIVQLAKMLAEKYPEYNIPTEFKDVDESLQAVPFSTKKLLDLGFKFKYTKEEMFDGAIRCCREKGLLQ*

Protein Length: 349

Fln nts: CGACAGAGTACATGGGGCTAGGCAGAGGCATGGGGATCGCAAGCAGTGTCTGTTTGGACACGCTCGTTCAAGATTCTGGAG_-_ATGGTTTTAGGCGAGGACAATGCCCAGCGGCCACTACAGCCGCCATCTATTCACGAGCTCCATCGAGAAAGTACAGTATGTGTCACTGGGGCGGCAGGGTTCATAGGATCATGGCTCGTTATGCGTTTGCTTGAGCGAGGATACACTGTTAGAGCCACAGTCCGTGACACAGGAGATCCAGTAAAGACAAAGCATCTGTTGGAGCTGCCCGGGGCAAATGAGAGACTGATACTTTACAAAGCAGATATGGACGAAGAAGGAAGCTTTGACGCCGCCATTGATGGGTGTGAGGGGGTCTTTCATCTAGCCACTCGTACGGTTTTCGAGTCGAGGGACCCGGAGAACGAGGTAATTAGGCCAGCCGTCAATGGGCTCTTGAACGTTATGAGATCCTGTGCAAAAGCTAAGTCTGTGAAGCGAGTTGTTTTCACTTCATCAGTTGGGGCTATGAAATTTACTGATGACTATGGCACTCCGGGGAAAATATATGATGAAACATGCTGGACAAATGTGGAGCTTTGTACACGCTTAAAGATAACTGGCTGGATATACTTTGCATCCAAAACATTAGCAGAAAGAGCTGCTTGGGAATTTGCAGAGAAGAATAACATAGATCTCATCAGTATCATTCCCCCATTAGTTGTTGGTCCGTTCATCTCGCAGACGATGCCTCCAAGCATGAAAACAGCTCTTGCACTGTTAACAAGGAATGAGCCTCACTACGCAATACTAAGACAGGCCCATCTCGTTCACCTGGACGATCTTTGTGTATCTCATATTTTTCTTTATGAACATCCTGAAGCCAAGGGAAGATACATCTCTTCTTCAGATGAAACCACTATTGTCCAACTGGCCAAAATGCTGGCTGAGAAATATCCAGAATACAATATACCAACCGAGTTCAAGGATGTGGATGAATCCTTGCAGGCTGTGCCATTTTCAACAAAGAAGCTCCTAGACTTGGGCTTCAAGTTCAAGTACACAAAGGAAGAGATGTTTGATGGGGCCATTCGGTGCTGCAGAGAGAAAGGATTGCTGCAGTGA___GAAACGACTGAGACTGAACTCTCAAGTAGCAAGGAGTATGGAAGATGAAAAACCAAAATTGTAGAACGTGTTATTTTAGGGCTTGCATTGCCATACCATGTTATTGATTCCAGTGCACTTGTGTATGTATTTACGATATTTCTAATGCCATGAGACACCACAAGGTAGCTTGAGTGGCCATCTATGTGTATTACAGCTTCAAAGCATAAAGGCTCGTTATACATTTTGGCACAAATCTCGTATCACATTTTCAGTTAGGATAAAGTCTTGTTATACATTTTGGTATAACTAATGATGTTAAATGTAAG

Fln Alignment:

sp_v1.1_unigene14441___MVLGEDNAQRPLQPPSIHELHRESTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDTGDPVKTKHLLELPGANERLILYKADMDEEGSFDAAIDGCEGVFHLATRTVFESRDPENEVIRPAVNGLLNVMRSCAKAKSVKRVVFTSSVGAMKFTDDYGTPGKIYDETCWTNVELCTRLKITGWIYFASKTLAERAAWEFAEKNNIDLISIIPPLVVGPFISQTMPPSMKTALALLTRNEPHYAILRQAHLVHLDDLCVSHIFLYEHPEAKGRYISSSDETTIVQLAKMLAEKYPEYNIPTEFKDVDESLQAVPFSTKKLLDLGFKFKYTKEEMFDGAIRCCREKG
C0PQE0_______________MAFGEEKTPLPQETPLNPQLHR-GTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDEGSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKDADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
756		15		84	0.999986
1006		20		80	0.995493
1008	20		80		0.995493
1088	90		10		0.90298
1324		84		16	1.0
1341	13		86		1.0
1392		9	18	9	0.999997
1393	27			72	1.0
1396		80		20	0.999996
1397			88	11	0.923564
1402		62	37		1.0
1403		66		33	1.0
1404		66		33	1.0
1405	25	12		37	1.0
1410	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain