SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14430

Length: 244 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene14430
ATGGGCCAGCTACTCTTCAGAATCTAATGAGTGCCGTTGCAATACGTCCTGTGGCATTTGCTTTTGGAGGCGAACATTTATGGGACAGATTTACTGTGTTTGTTCTTTTTAGCAATTGCTCTGTTTATGCTCTTTGTCCAGTAGTCCCTTTTGGAAGCATCTACAACGGTTCAACTATTGAAGATATTTATAAAGATGCTTATATGTTGGGTCTACAGTCTAATTCTATTGGTTCCAAGGATGC

Ace file of the UniGene sp_v1.1_unigene14430

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear pore complex protein-related	-	-	1.0e-16	56%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	65%
Blast2go	nuclear pore complex	-	-	3.30595e-17	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	3.30595e-17	77%
Blast2go	protein export from nucleus	GO:0006611	Biological Process	3.30595e-17	77%
Blast2go	nuclear pore	GO:0005643	Cellular Component	3.30595e-17	77%
Blast2go	plastid	GO:0009536	Cellular Component	3.30595e-17	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S7C6

Fln msg: Distance to subject end: 447 aas, your sequence is shorter than subject: 80 - 748

Fln protein: GPATLQNLMSAVAIRPVAFAFGGEHLWDRFTVFVLFSNCSVYALCPVVPFGSIYNGSTIEDIYKDAYMLGLQSNSIGSKD

Protein Length: 81

Fln nts: ATGGGCCAGCTACTCTTCAGAATCTAATGAGTGCCGTTGCAATACGTCCTGTGGCATTTGCTTTTGGAGGCGAACATTTATGGGACAGATTTACTGTGTTTGTTCTTTTTAGCAATTGCTCTGTTTATGCTCTTTGTCCAGTAGTCCCTTTTGGAAGCATCTACAACGGTTCAACTATTGAAGATATTTATAAAGATGCTTATATGTTGGGTCTACAGTCTAATTCTATTGGTTCCAAGGATGC

Fln Alignment:

sp_v1.1_unigene14430___RPVAFAFGGEHLWDRFTVFVLFSNCSVYALCPVVPFGSIYNGSTIEDIYKDAYMLGLQSNS
A9S7C6_______________RAVGFAFGGEHLWDRFTVFILFSNGSIYVLCPVVPFGSMFNGAAIDELVKDAMHFTLPSST

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
168	50		50		1.0
236		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain