SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14403

Length: 1177 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14403

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NNI6_PICSI	-	-	90%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	peptidyl-prolyl cis-trans isomerase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein folding	GO:0006457	Biological Process	0.0	91%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	0.0	91%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	91%
Blast2go	Cyclophilin-like	IPR015891	-	91%
Blast2go	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	IPR020892	-	91%

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
135		83		16	0.994512
148		83		16	0.994512
169	10			90	0.90298
170		90		10	0.90298
171	90		10		0.90298
173			10	90	0.90298
224			10	90	0.90298
470		9	90		0.999842
493		22	74		1.0
494	9		90		1.0
497		87	12		1.0
499	87		12		1.0
502	87	12			1.0
503		87		12	1.0
504	87			12	1.0
505	87		12		1.0
506	87		12		1.0
509			87	12	1.0
512		12	87		1.0
543	91		2		0.995208
551	91	2			0.995912
553		5	94		0.998894
554	90			3	0.997073
555	90	3		6	0.997073
556	93	6			0.999153
585	92	5		2	0.992495
729		5		94	0.998578
733		5		94	0.998578
735	94			5	0.998578
741		4		95	0.996252
745		4	95		0.996599
1007		12		87	0.992554
1010	71	28			1.0
1028			16	83	0.994512
1083	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain