SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14322

Length: 1086 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14322

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tryp_alpha_amyl multi-domain protein	-	-	1.0e-14	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	lipid binding	-	-	1.35229e-16	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	1.35229e-16	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	1.35229e-16	89%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.35229e-16	89%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	1.35229e-16	89%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
762		66	33		1.0
883	88		11		0.923564
981	10			90	0.90298
983	71	14	14		0.984337
986			14	85	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
302	319	CCCTCC CCCTCC CCCTCC	18
857	871	ATTGT ATTGT ATTGT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain