SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14313

Length: 1887 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-binding ion transporter-like protein n=1 Tax=Physcomitrella patens RepID=Q6QF42_9BRYO	-	-	63%
FL-Next	tr=Calmodulin-binding ion transporter-like protein; Physcomitrella patens.	-	-	63%
Blast2go	k channel inward rectifier conserved region 2 domain protein	-	-	58%

Source	InterPros	Term	Type	Identity
Blast2go	Potassium channel, inwardly rectifying, Kir, cytoplasmic	IPR013518	-	58%
Blast2go	Potassium channel, inwardly rectifying, Kir, conserved region 2	IPR013521	-	58%
Blast2go	Immunoglobulin E-set	IPR014756	-	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q6QF42

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 34 aas, putative chimeric sequence, your sequence is shorter than subject: 438 - 476

Fln protein: MILKRLVTEGKTDRVSDGLDANATQACNSVTDAQKRWRRLKHTMTVVNRMTASKSSNYDLLEEEAVGGNQKCSLYAKGDAGSMGAAAFEGVRTTAQSRRKGRKGMEGLLVRQDKGFIAFIQDFYVTCLKLPITHFLIGVFLVPVALGLLFTPLYLLDIDGLSFDGVTDEKLNDSPISSTKHWCSALLNVFLYALSLSTTFGGSPVAAVSPFCLLVANMNTLMAQFLFVFLSGAVFARMSQPSQPIRCAKKAIIKTDDVTVNPGEYSEEKFKVFAVRLVLGGPTPCELVDAKICLTFRIFVTLPNGSIFCSTQDLDIVRSEVSYLRYGLMVRHIIDRKSPVYGHTLESLDEGDASFSLTIMGMERSSMQSIFHLEDYFVSDGDVMWDGDYVDFIHVNQKGQRVLDHSKIDLLKPNKATSTDTKSGAETDSMKTKPEQK*

Protein Length: 439

Fln nts: TCACGTGAGTCATCCCTGGCCAGCAGCCACAACGATATTATTGCAGATTCATCTTTACCAG_-_ATGATACTGAAAAGACTGGTTACAGAGGGAAAGACAGACAGAGTTTCAGATGGACTGGATGCAAATGCTACACAGGCATGCAATTCTGTAACAGATGCACAGAAAAGGTGGAGGCGCCTCAAGCACACAATGACTGTTGTTAACCGTATGACTGCTAGCAAGTCTTCAAATTATGATCTTCTGGAAGAAGAAGCTGTTGGAGGAAATCAAAAGTGCTCATTGTATGCAAAAGGAGATGCAGGAAGCATGGGAGCAGCAGCATTTGAAGGAGTGAGGACCACAGCACAAAGCAGACGGAAAGGTAGAAAAGGGATGGAAGGATTGCTTGTGAGACAGGACAAAGGCTTCATTGCTTTTATTCAGGACTTTTATGTAACCTGCTTGAAGCTCCCTATCACTCACTTCTTAATTGGGGTCTTCCTTGTTCCAGTTGCACTTGGGTTACTTTTCACACCGTTGTATCTGTTGGATATTGATGGGCTAAGTTTTGATGGAGTAACGGATGAAAAATTAAATGACAGTCCTATATCATCTACCAAACATTGGTGTTCTGCTCTTTTGAATGTGTTTCTTTATGCATTGTCTCTTTCAACAACATTTGGAGGATCTCCAGTTGCTGCAGTGTCTCCTTTTTGCCTACTTGTGGCAAATATGAACACACTAATGGCGCAGTTTCTGTTCGTCTTTCTTAGTGGAGCTGTTTTTGCACGCATGTCACAACCATCACAGCCGATTCGATGTGCTAAGAAAGCGATAATCAAGACTGATGATGTTACTGTCAATCCAGGAGAGTACTCTGAAGAAAAGTTCAAGGTATTTGCTGTAAGGTTGGTGCTTGGAGGGCCAACACCTTGTGAGCTTGTTGATGCAAAGATATGCTTGACGTTCAGGATTTTCGTCACGCTTCCAAATGGTTCCATATTTTGCTCCACTCAAGATTTGGATATTGTCCGATCAGAGGTTTCATACCTTCGATATGGACTTATGGTACGTCATATTATTGACAGAAAGAGCCCTGTTTATGGGCATACTCTGGAGAGTTTGGATGAGGGAGATGCCTCATTTTCACTAACAATCATGGGGATGGAAAGGTCATCAATGCAATCTATATTTCACCTGGAGGATTATTTTGTTTCTGATGGTGATGTTATGTGGGATGGAGATTATGTAGATTTCATCCATGTAAATCAAAAGGGTCAGCGTGTTCTTGATCATTCAAAGATTGACCTCCTAAAGCCGAACAAAGCTACTTCAACAGACACCAAGTCTGGAGCAGAGACTGATTCTATGAAAACGAAACCAGAGCAGAAGTAG___AGAACATTGCAGTGTCGGTTTGAGAAACTTGCTATCGAGTTATTGCACTTTCAGCCACATGTTATTCAGGTCAAATCTGTTGCAGGAATATCAGTGACTTTTTTGGTTGCATCGTTCTGCAAATCTGTTAGTGTTCTAAAGCAGCCTTTGCAAAGAATTCTATTTGTCAACATGGACAGTTGCTACTTGTTTTTAATATGTCAAGAGGCAATACATCCATGGCAATGTCAAGGCTCAAGTTTTCTCCCGCTCATCCTCCACCGAATATATCTGCAGCTGAAAATATTGTAATGTAAATCAGTATTTTTCTTAGTTGCCTCTTTCATCAATTGCTTATTATAGTGTATCCTGATTAAAAGACGGAAAATAATTGAAGCGTATTTTTATTGTATAGCTACTAATCGCTAGAATATAAACAATGTAGTTTACGCCATTGATGAGCAAAAGGGCATCGATAAAAAATCACGAGGATCTAGACCATAGTTACCAAGTTCAAGTTCAAATTCAAATTC

Fln Alignment:

sp_v1.1_unigene14313___SVTDAQKRWRRLKHTMTVVNRMTASKSSNYDLLEEEAVGGNQKCSLYAKGDAGSMGAAAFEGVRTTAQSRRKGRKGMEGLLVRQDKGFIAFIQDFYVTCLKLPITHFLIGVFLVPVALGLLFTPLYLLDIDGLSFDGVTDEKL---NDSPISSTKHWCSALLNVFLYALSLSTTFGGSPVAAVSPFCLLVANMNTLMAQFLFVFLSGAVFARMSQPSQPIRCAKKAIIKTDDVTVNPGEYSEEKFKVFAVRLVLGGPTPCELVDAKICLTFRIFVTLPNGSIFCSTQDLDIVRSEVSYLRYGLMVRHIIDRKSPVYGHTLESLDEGDASFSLTIMGMERSSMQSIFHLEDYFVSDGDVMWDGDYVDFIHVNQKGQRVLDHSKIDLLKPNK
Q6QF42_______________SSSGAGNRWRRLRHSVQFAAYMTQLRHGEADLIEENANEVLHRQNSMKDG-SGFSGGVAFDGAKTAATSSPKGRKGMEGMLVRHDRSFLTILQDFYVACLKMPMGQFTVGVFLAPLVLGLLFTPLFLLDKGGLSFDGTREAEAAPGEGSVVAATRGF-SALLNVYLYALSLSTTFGGSPVVAHSPFCLLVANVNTLVAQFLFVFLSGGVFARMSQPSSPVRCSKKAVIRCEDY-VSTSEI--EKYRVFAVRLVLTGPAPCELVDAKICLTFRIFVKLPSGSMFCSSQDLQLVRPEVSYLQYGLMVRHIIDKKSPMFGHTMKTLKDGDASFSLTIMSLERTSMQPIFHLQDYFVCDGDLVWDGDFEDFIHINEDGQRILDHSKIDLLKTFK

SNPs (tot: 5)

Position	A %	G %	T %	Probability
1007	14		85	0.993533
1245	75	25		0.996473
1253	85		14	0.993533
1254	85	14		0.993533
1255	85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain