SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14304

Length: 1935 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14304

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative pre-mRNA splicing factor SF2 n=1 Tax=Oryza sativa Japonica Group RepID=Q7XI72_ORYSJ	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	pre-mrna-splicing factor sf2	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR09

Fln msg:

Fln protein: MRRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNSRDAEDAIRGRDGYKFDGHRLRVERAHGGRASSVEAYGSYSSGSHSSSLYRRTGYRVIVHGLPSSASWQDLKDHMRRAGDVCFSQVYRKSSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVKEDKGHRSSYSRSRSRSYSRSPSYDYYRRGYRGRSCSRSYSRSYSERSARSYDSRQSRSRSRSRSPSVYSRSRSRSVSKSAYSPSRKSYSRSISRSRSRSFSRSRSRAYSYKKSISRSRSRSLSIPNNTEKRSISASPSRSRSRSPSRSRSRSPSPSRSRSRSRSRSPLEKAKSRSRSEGPSVRSLSPRSEDDISPRRDSSLSN*

Protein Length: 387

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGCAATTTTGTTTTAGAAGAGGAGAGAAAAACAGAGAGGCACGAGCAGTTGGGGTTTTGCGTCGCCAGGTCCTGCTTCGAATTCGTTAGAGCAAAGGAGCTCATGGAGCAATTTTGTTTTAGAAGAGGAGAGAAAAACAGAGAGGCACGAGCAGTTGGGGTTTTGCGTCGCCAGGTCCTGCTTCGAATTCGTTAGAGCATATTTTAGATCTTATATCTGGTTCTTTCCTGAGGGTAGTTGTGATCAGCACGACTATCATCCCTAGAAAACTACA_-_ATGAGAAGATCAAACAGCACAATTTATGTTGGCAATCTTCCTGGTGACATACGTGAGAGTGAGATTGAAGATCTGTTTTACAAGTATGGACGAATCATAGACATTGATTTGAAGTTGCCACCACGTCCACCCGGTTATTGTTTCATTGAGTTTGATAATTCTCGAGATGCAGAGGATGCAATCAGAGGCAGAGATGGCTACAAATTTGATGGACATAGACTCCGGGTTGAGAGGGCTCATGGAGGGCGAGCATCATCTGTTGAAGCGTATGGTAGCTACTCTAGTGGTAGTCATTCGAGTAGTTTGTATCGGCGTACTGGATACAGAGTTATTGTGCATGGACTACCTAGCTCTGCATCATGGCAAGATTTGAAGGATCACATGCGCCGTGCTGGTGATGTGTGCTTTTCTCAAGTTTACCGCAAAAGCAGTGGCACTGTGGGAGTTGTAGACTACACAAGCTACGAGGATATGAAATATGCTATAAGAAAGCTTGATGATTCAGAGTTTCGCAATCCATTTTCTCGATCTTACATAAGGGTTAAGGAAGATAAAGGACATCGCAGTAGTTATTCTAGAAGCCGCAGTCGAAGTTACAGCCGCAGTCCAAGCTATGACTATTACAGGCGAGGATACCGAGGGCGCAGTTGTTCTCGAAGTTACTCAAGAAGCTACAGCGAGAGAAGTGCTAGAAGTTATGATTCTCGTCAGAGTCGTAGTCGAAGCCGCTCTAGAAGCCCGTCTGTATATTCAAGATCACGATCAAGATCAGTCTCAAAAAGTGCATACTCCCCAAGTCGTAAATCTTACTCCCGTTCGATATCACGTTCACGCTCACGTTCCTTTTCCAGGTCTAGATCGAGGGCATATTCTTACAAGAAATCGATTTCTCGAAGCAGGAGCCGTAGTTTGAGCATACCCAATAATACTGAAAAGCGAAGCATTAGTGCATCTCCATCTCGGTCTCGGTCTCGGTCTCCTTCCCGCTCCCGCTCCCGCTCTCCTTCTCCCTCTCGCTCTCGCTCTCGCTCACGGTCACGTTCACCTTTGGAGAAGGCGAAGTCACGAAGCCGTAGTGAAGGCCCAAGTGTTCGAAGTCTTAGCCCGAGATCAGAAGATGACATATCTCCGAGGCGGGATTCTTCTTTATCTAATTGA___TGACCGGATGTCACTGGATATCACTAGTTTTGAAATGAGAATTGCATCCGTGAACAGGCAATTGTTAGATGACATCTAGGTTATAATGGTTGAAAAGACTGGTTTCAGTCGGTTGTGTTTTCAGATGTCTGGACAGATGAATCAATTTTCAGCCGAAAGCTGTGCAATGTATTATGTATATTTTAAATTTATTTTTGGCTGGCAAACAACTTCGTATATGTGCTGCCCTTGCTTCATATCTATCTATTTATTTCTAAATGGTCCTAATGGTTTATAGTTTTTTAACGACATATGTGACTGACTAATGCTGAGGGCAAAAGAATACGCCTTTCATTAGAGCTCACCAATTGGATAATATCTACTCCGTTCCATGAGAGGTCAACAATTGAATCATTTCATCTACTGCAGTATGTCTATTTTCTAGTTGGCACATATATATTCCTGAACCTTTTTCGTTTTCGAATGATTAGATGTA

Fln Alignment:

sp_v1.1_unigene14304___MRRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNSRDAEDAIRGRDGYKFDGHRLRVERAHGGRASSVEA-XXXXXXXXXXXXLYRR-TGYRVIVHGLPSSASWQDLKDHMRRAGDVCFSQVYRKSSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVKEDK
C0PR09_______________MKRSNSTIYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNARDAEDAIRGRDGYKFDGHRLRVERAH-GRASSVDVYYGSHSSGSRSSGLYRRSTGYRVIVHGLPTSASWQDLKDHMRRAGDVCFSQVYRKGSGTVGVVDYTSYEDMKYAIRKLDDSEFRNPFSRSYIRVREDK

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
61	66			33	0.997452
145			66	33	0.997452
146			66	33	0.997452
147	66			33	0.997452
148		66		33	0.997452
153		66		33	0.997452
156	33	66			0.997452
157	33	66			0.997452
158	66		33		0.997452
159	33			66	0.997452
164	33	66			0.997452
165			33	66	0.997452
166	33		66		0.997452
167	33			66	0.997452
168	33	66			0.997452
170	33		66		0.997452
172	33	66			0.997452
173	66		33		0.997452
174	33			66	0.997452
176	33		66		0.997452
177	66		33		0.997452
180	33			66	0.997452
183	33			66	0.997452
191		66	33		0.997452
193		66	33		0.997452
197	66			33	0.997452
198			33	66	0.997452
199		33		66	0.997452
200		66	33		0.997452
201			66	33	0.997452
202		33	66		0.997452
203	66		33		0.997452
207	66		33		0.997452
208	66		33		0.997452
209	66			33	0.997452
211		33		66	0.997452
212			66	33	0.997452
213			33	66	0.997452
215		66		33	0.997452
217		33		66	0.997452
219	33		66		0.997452
220	33			66	0.997452
223		33	66		0.997452
224	66		33		0.997452
225		66		33	0.997452
227	20		20	60	0.99255
228	80		20		0.995493
229	20		20	60	0.99255
230			80	20	0.995493
438		85	14		0.993533
439		85		14	0.993533
441	14		85		0.993533
442			14	85	0.993533
444	71	14	14		0.984337
445	14		14	71	0.984337
446	28			71	1.0
449			28	71	1.0
450	14	14		71	0.984337
451		85	14		0.993533
452	83			16	0.994512
453			16	83	0.994512
454	16			83	0.994512
455		16	83		0.994512
458			16	83	0.994512
459		16		83	0.994512
460		16		83	0.994512
941		9		90	0.999872
1105		12		87	0.999964
1161	11	88			0.923564
1163	88			11	0.923564
1166			11	88	0.923564
1169	88			11	0.923564
1171	11		88		0.923564
1172			88	11	0.923564
1179	11	88			0.923564
1182	88			11	0.923564
1183		88	11		0.923564
1184	88			11	0.923564
1185	88			11	0.923564
1189	57		42		1.0
1615		5		94	0.999997
1616			5	94	0.999997
1619	94			5	0.999997
1621	5	94			0.999997
1623		5	94		0.999997
1624	94			5	0.999997
1625	94			5	0.999997
1626	94		5		0.999997
1627			66	33	1.0
1635	94	5			0.999997
1684	87		12		1.0
1724	44		50		1.0
1913	66			33	0.997452

SSRs (tot: 3)

Start position	End position	Sequence	Length
1260	1281	TCTCGG TCTCGG TCTCGG TCTC	22
1284	1303	TCCCGC TCCCGC TCCCGC TC	20
1313	1333	CTCTCG CTCTCG CTCTCG CTC	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain