SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14283

Length: 474 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene14283
TTTGTTTAGAAGATGCGTGAACGAGATGTAGTGTACATGGACAAGCATGATTGCTGGGTACGCTTGCTGTGGAAACATGGAAGATGCACGCCATGTTTTTAATGAAATGCCTGAACGGAATGTATTTTCATGGAATGCAATGCTAGCAGGATATGCACAGAATGGGCTAGGCGAAGAGGCTCTGAAATTATGGTGTCAAATGCAAAGGATTGATACTGAGATAGACAGTGTCACCTTTGTGGCCGTTCTGAGTGCTTGTGCTAGCTTGGCAACTCTGGAGCAAGGTAAGCAGGTTCATGGCCATGTCATTAGAACTTGATTGAGTCGGAGGTCTTGAGGGAGTGCTCTTCTTGACATGTATGCAAAATGTGGCAGTATAGAGAATGCCCACCAACATTTTGAGATTATGCCAAAACGAGATGTGGTATCATGGAACACTATGATCACAGCGTATGCCCAGAATGGGTACGGCAA

Ace file of the UniGene sp_v1.1_unigene14283

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	2.0e-30	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	pentatricopeptide repeat-containing	-	-	8.15561e-32	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	8.15561e-32	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 18 aas, your sequence is shorter than subject: 157 - 394

Fln protein: LFRRCVNEM*CTWTSMIAGYACCGNMEDARHVFNEMPERNVFSWNAMLAGYAQNGLGEEALKLWCQMQRIDTEIDSVTFVAVLSACASLATLEQGKQVHGHVIRT*LSRRS*GSALLDMYAKCGSIENAHQHFEIMPKRDVVSWNTMITAYAQNGYG

Protein Length: 158

Fln nts: TTTGTTTAGAAGATGCGTGAACGAGATGTAGTGTACATGGACAAGCATGATTGCTGGGTACGCTTGCTGTGGAAACATGGAAGATGCACGCCATGTTTTTAATGAAATGCCTGAACGGAATGTATTTTCATGGAATGCAATGCTAGCAGGATATGCACAGAATGGGCTAGGCGAAGAGGCTCTGAAATTATGGTGTCAAATGCAAAGGATTGATACTGAGATAGACAGTGTCACCTTTGTGGCCGTTCTGAGTGCTTGTGCTAGCTTGGCAACTCTGGAGCAAGGTAAGCAGGTTCATGGCCATGTCATTAGAACTTGATTGAGTCGGAGGTCTTGAGGGAGTGCTCTTCTTGACATGTATGCAAAATGTGGCAGTATAGAGAATGCCCACCAACATTTTGAGATTATGCCAAAACGAGATGTGGTATCATGGAACACTATGATCACAGCGTATGCCCAGAATGGGTACGGCAA

Fln Alignment:

sp_v1.1_unigene14283___TWTSMIAGYACCGNMEDARHVFNEMP----ERNVFSWNAMLAGYAQNGLGEEALKLWCQMQRIDTEIDSVTFVAVLSACASLATLEQGKQVH
B8LKN6_______________SWNVAIAGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKRIH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
173		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain