SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14278

Length: 2256 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14278
CGTCGTGACCTTGGCTGTCACTCATCCCTCAGACAAAGACTGGGTCAAGGGTGAAAAGTGTGCTTGAAAAATGTAGATTTTTTCACACTATGTTGCTTATTGTTGCTCTAATTGGCACATGCATGGTTATTGGAGATGGGGTCCTGACTCCCGCCATTTCTGTTTTTTCTGCAGTGTCAGGCCTCGAACTCTCAATGTCACACCATGAATATGCGGTGGTTCCTATTGCATGTCTTATACTGGTAGGCCTATTTGCACTACAACACTATGGCACACATCGGGTGGGATTCATGTTTGCACCAATTGTTTTGACTTGGCTACTATGCATCAGTGCGATTGGCCTCTATAATATTATTCGCTGGAATCCACATGTATATCAAGCACTCTCTCCATATTACATGTACAACTTTTTGAAGAAGACACAAAGAGGGGGTTGGATGTCCTTGGGAGGCATTCTATTGTGCATCACAGGTTCAGAGGCAATGTTTGCAGATCTCGGGCACTTCTCGCAATTATCAATCAAGATTGCTTTTACTTCCCTAGTCTACCCTGCACTAATTTTGGCATACATGGGCCAAGCTGCATATATCTCAACACATCATGACTTCACTGGTGCTTATCAAATTGGCTTTTACGTATCTGTACCTGAACATCTAAGATGGCCAGTACTGGCAATTGCAATACTTGCATCTGTGGTTGGAAGCCAAGCAGTCATCACTGGGACATTTTCAATCATTAAACAATCCTTGGCATTAGGCTGCTTTCCAAGAGTGAAAGTGGTGCACACATCTGATAAAATATATGGGCAGATATACATTCCAGAAATCAACTGGATATTAATGAGCCTCTGTCTTGCTGTTACGATTGGTTTTAGGGACACTAAACACATGGGAAATGCTTCCGGTTTGGCTGTCATCACTGTTATGTTGGTCACAACATGTCTCATGTCACTAGTAATTATTTTGTGCTGGCACAAAAATGCCTTGCTAGCTTTTCTCTTTATCCTCTGCTTCGGATCAATTGAGGCCCTCTACTTTTCAGCTTCTCTCATTAAATTTCTGGAAGGAGCCTGGGTACCTTTAGTTCTTGCATTCATATTCATGTTTGTAATGTATGTATGGCACTATGGAACAATTAAGAAATATGAGTTTGACTTGCAAAATAAGGTCTCCATGAAGTGGCTGCTTGGTCTTGGACCAAGTCTGGGGATTGTGCGTGTTCCTGGTATTGGACTTATACATACAGAGCTGGTCACAGGAGTACCTGCAATTTTTACGCATTTTGTAACCAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTGTGTGTATCAAATCAGTGCCAGTACCTTATGTCCGGCCAGAGGAACGATATCTTATAGGGCGTATTGGGCCTAAGGAGTACAGGCTATATAGATGCATTGTTAGGTACGGATATCGTGATGCCCACATAGATGACCATGAATTTGAGAATCAGCTTGTTTTCAGCATTGGAGAGTTTATTCGTTCAGAGAGGCAAAATTTGTCCCCAAATGTGGATTCTTCTCAAGATGGGAGAATGACTGTAATAGGAACTCCAAGGAGAGAAGATATGATAAGTGATGAAACAGACGAGTGTATGCAATCTGCTTCTGCATCAAATCCTAGGTCCCCAATTATTCAAAGCATCCATGATATTATAGAGGTAAACTCTCCTAAACTTGTAAGGAGAAAGAAAGTGAGATTTTTGTTGCCCAATAGCCCTGAAATGGATCGCACTGTAAGAGATGAGCTGCAAGAACTTTCAGACGCTAAGGAAGCTGGAACTGCCTTTATAATAGGCCACTCCTATGTGAAAGCAAAAAGAGGCTCTTCTTTTCTTAGGAAGTTCGTTATCAATGTGGCGTATGAGTTTCTCAGAAAGAACTGCAGGGGACCATCGGCTGCTTTGAATATACCTCATATTTCACTTTTAGAGGTCGGCATGGTTTATCAAGTTTAAGTCATAGTGTTTGTAACCTAATATATATTTGCTCTGGCTTATGTTACCTTACTAACACTTGTATTAATACTTTTTGGGCTGAACTCCTTGTAAGCCATGAGAAATAGACTGTAATAAAATGCACAACCATGAATAATTTCCTGGAATACGTCATTTGGAAATACACCCAGAAATGCTGCATTCAGTGCTCTTTAGGTACAAAGAGCTTAGAGAACTTGTATAATTATTCATGATTAAACTCATTTCTGAATTGTGTACTGAATTCATTTGAAAAAAA

Ace file of the UniGene sp_v1.1_unigene14278 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RUB7_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	high affinity potassium transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transport	GO:0006813	Biological Process	81%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 630 - 250

Fln protein: MLLIVALIGTCMVIGDGVLTPAISVFSAVSGLELSMSHHEYAVVPIACLILVGLFALQHYGTHRVGFMFAPIVLTWLLCISAIGLYNIIRWNPHVYQALSPYYMYNFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPALILAYMGQAAYISTHHDFTGAYQIGFYVSVPEHLRWPVLAIAILASVVGSQAVITGTFSIIKQSLALGCFPRVKVVHTSDKIYGQIYIPEINWILMSLCLAVTIGFRDTKHMGNASGLAVITVMLVTTCLMSLVIILCWHKNALLAFLFILCFGSIEALYFSASLIKFLEGAWVPLVLAFIFMFVMYVWHYGTIKKYEFDLQNKVSMKWLLGLGPSLGIVRVPGIGLIHTELVTGVPAIFTHFVTNLPAFHQVLVFVCIKSVPVPYVRPEERYLIGRIGPKEYRLYRCIVRYGYRDAHIDDHEFENQLVFSIGEFIRSERQNLSPNVDSSQDGRMTVIGTPRREDMISDETDECMQSASASNPRSPIIQSIHDIIEVNSPKLVRRKKVRFLLPNSPEMDRTVRDELQELSDAKEAGTAFIIGHSYVKAKRGSSFLRKFVINVAYEFLRKNCRGPSAALNIPHISLLEVGMVYQV*

Protein Length: 631

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCCTCAGACAAAGACTGGGTCAAGGGTGAAAAGTGTGCTTGAAAAATGTAGATTTTTTCACACT_-_ATGTTGCTTATTGTTGCTCTAATTGGCACATGCATGGTTATTGGAGATGGGGTCCTGACTCCCGCCATTTCTGTTTTTTCTGCAGTGTCAGGCCTCGAACTCTCAATGTCACACCATGAATATGCGGTGGTTCCTATTGCATGTCTTATACTGGTAGGCCTATTTGCACTACAACACTATGGCACACATCGGGTGGGATTCATGTTTGCACCAATTGTTTTGACTTGGCTACTATGCATCAGTGCGATTGGCCTCTATAATATTATTCGCTGGAATCCACATGTATATCAAGCACTCTCTCCATATTACATGTACAACTTTTTGAAGAAGACACAAAGAGGGGGTTGGATGTCCTTGGGAGGCATTCTATTGTGCATCACAGGTTCAGAGGCAATGTTTGCAGATCTCGGGCACTTCTCGCAATTATCAATCAAGATTGCTTTTACTTCCCTAGTCTACCCTGCACTAATTTTGGCATACATGGGCCAAGCTGCATATATCTCAACACATCATGACTTCACTGGTGCTTATCAAATTGGCTTTTACGTATCTGTACCTGAACATCTAAGATGGCCAGTACTGGCAATTGCAATACTTGCATCTGTGGTTGGAAGCCAAGCAGTCATCACTGGGACATTTTCAATCATTAAACAATCCTTGGCATTAGGCTGCTTTCCAAGAGTGAAAGTGGTGCACACATCTGATAAAATATATGGGCAGATATACATTCCAGAAATCAACTGGATATTAATGAGCCTCTGTCTTGCTGTTACGATTGGTTTTAGGGACACTAAACACATGGGAAATGCTTCCGGTTTGGCTGTCATCACTGTTATGTTGGTCACAACATGTCTCATGTCACTAGTAATTATTTTGTGCTGGCACAAAAATGCCTTGCTAGCTTTTCTCTTTATCCTCTGCTTCGGATCAATTGAGGCCCTCTACTTTTCAGCTTCTCTCATTAAATTTCTGGAAGGAGCCTGGGTACCTTTAGTTCTTGCATTCATATTCATGTTTGTAATGTATGTATGGCACTATGGAACAATTAAGAAATATGAGTTTGACTTGCAAAATAAGGTCTCCATGAAGTGGCTGCTTGGTCTTGGACCAAGTCTGGGGATTGTGCGTGTTCCTGGTATTGGACTTATACATACAGAGCTGGTCACAGGAGTACCTGCAATTTTTACGCATTTTGTAACCAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTGTGTGTATCAAATCAGTGCCAGTACCTTATGTCCGGCCAGAGGAACGATATCTTATAGGGCGTATTGGGCCTAAGGAGTACAGGCTATATAGATGCATTGTTAGGTACGGATATCGTGATGCCCACATAGATGACCATGAATTTGAGAATCAGCTTGTTTTCAGCATTGGAGAGTTTATTCGTTCAGAGAGGCAAAATTTGTCCCCAAATGTGGATTCTTCTCAAGATGGGAGAATGACTGTAATAGGAACTCCAAGGAGAGAAGATATGATAAGTGATGAAACAGACGAGTGTATGCAATCTGCTTCTGCATCAAATCCTAGGTCCCCAATTATTCAAAGCATCCATGATATTATAGAGGTAAACTCTCCTAAACTTGTAAGGAGAAAGAAAGTGAGATTTTTGTTGCCCAATAGCCCTGAAATGGATCGCACTGTAAGAGATGAGCTGCAAGAACTTTCAGACGCTAAGGAAGCTGGAACTGCCTTTATAATAGGCCACTCCTATGTGAAAGCAAAAAGAGGCTCTTCTTTTCTTAGGAAGTTCGTTATCAATGTGGCGTATGAGTTTCTCAGAAAGAACTGCAGGGGACCATCGGCTGCTTTGAATATACCTCATATTTCACTTTTAGAGGTCGGCATGGTTTATCAAGTTTAA___GTCATAGTGTTTGTAACCTAATATATATTTGCTCTGGCTTATGTTACCTTACTAACACTTGTATTAATACTTTTTGGGCTGAACTCCTTGTAAGCCATGAGAAATAGACTGTAATAAAATGCACAACCATGAATAATTTCCTGGAATACGTCATTTGGAAATACACCCAGAAATGCTGCATTCAGTGCTCTTTAGGTACAAAGAGCTTAGAGAACTTGTATAATTATTCATGATTAAACTCATTTCTGAATTGTGTACTGAATTCATTTGAAAAAAA

Fln Alignment:

sp_v1.1_unigene14278___IHTELVTGVPAIFTHFVTNLPAFHQVLVFVCIKSVPVPYVRPEERYLIGRIGPKEYRLYRCIVRYGYRDAHIDDHEFENQLVFSIGEFIRSERQNLSPNVDSSQDGRMTVIGTP--RREDMISDET-DECMQSASASNPRSPIIQSIHDIIEVNSPKLVRRKKVRFLLPNSPEMDRTVRDELQELSDAKEAGTAFIIGHSYVKAKRGSSFLRKFVINVAYEFLRKNCRGPSAALNIPHISLLE
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
342		66		33	1.0
701		11		88	0.923564
966	87		12		0.992554
1044	84		15		0.999986
1287	10		90		0.90298
1356	83			16	0.994512
1358	16	83			0.994512
1359		16	83		0.994512
1362	83	16			0.994512
1511	80		20		0.995493
1729	14		85		0.993533
1731	71		14		0.984337
1755		88		11	0.923564
1906		83		16	0.994512
1976	87		12		0.992554
1978		87	12		0.992554
1979	12	87			0.992554
1982		88	11		0.923564
1985	11		88		0.923564
1987			11	88	0.923564
1990	11		88		0.923564
1991		11		88	0.923564
1993	11	88			0.923564
1995	88		11		0.923564
2104	25		75		0.996473
2105	75		25		0.996473
2112		75		25	0.996473
2114	16		83		0.994512
2115		16	83		0.994512
2118		16		83	0.994512
2123	83			16	0.994512
2125	14	85			0.993533
2127		85	14		0.993533
2131			14	85	0.993533
2150	16	83			0.994512
2153	83		16		0.994512
2154		16		83	0.994512
2155		16		83	0.994512
2161	83		16		0.994512
2162	83			16	0.994512
2165	83	16			0.994512
2166			16	83	0.994512
2168	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain