SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14268

Length: 1628 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14268

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial-processing peptidase subunit beta, mitochondrial precursor, putative (EC:3.4.24.64)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	69%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	69%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase M16, C-terminal	IPR007863	-	69%
Blast2go	Peptidase M16, core	IPR011237	-	69%
Blast2go	Metalloenzyme, LuxS/M16 peptidase-like, metal-binding	IPR011249	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC43

Fln msg: your sequence is longer than subject: 365 - 269

Fln protein: MQMTKEAIKAQERDPFTAFANRVRELNYGKSYFFKPIRAKDLKNVDPIKSCQYFDCCFKDPSTFTVVIVGNIEPAIALPLILQYLGGIPKPDKPVMHFHRDELKALPFTFPKSVVREVVRSQMVEAQCSVQITFPVDLKGPHVMEEIHFVGFLSKLLETRIMQVLRFKHGQIYSVNVSVFLGGNKPSRTGNVRGDITVNFSCDPDSSWRLVGLSLDEMLCLQEQGPSDLDVSSILEIEQRAYENGLQENGYWLDRILRGYQSRFYAGDLNVSLKAQDEWRNKVRSSLTKVTMQEALQRILPSPCTKQYTVVVLMPKLPRLQRLKSFLFSGEKRLGIEGKVLIGTAGTLVLAAFWWKYSRAKNVT*

Protein Length: 366

Fln nts: GATGAAGAGGTTAAGTTAGTT_-_ATGCAAATGACAAAAGAGGCAATAAAAGCACAGGAAAGAGATCCATTCACAGCATTTGCTAATCGTGTACGGGAGCTTAACTATGGGAAGTCTTATTTCTTTAAGCCTATCAGAGCGAAGGATTTGAAAAATGTGGACCCTATAAAGTCCTGTCAGTACTTTGATTGCTGTTTCAAGGATCCCTCTACTTTTACTGTGGTTATTGTTGGAAATATTGAGCCAGCAATAGCGCTTCCACTGATTTTGCAATATTTGGGTGGCATACCAAAGCCCGACAAACCAGTTATGCATTTTCACCGTGATGAGCTCAAGGCATTACCTTTTACATTCCCCAAAAGTGTTGTAAGAGAAGTTGTACGCAGTCAGATGGTAGAAGCACAATGTTCTGTTCAGATTACCTTTCCTGTTGACCTCAAGGGTCCACATGTGATGGAGGAAATTCATTTTGTTGGCTTTCTGAGCAAGTTGTTGGAGACAAGGATCATGCAGGTGCTTCGTTTCAAGCATGGACAGATATATTCTGTAAATGTTTCCGTCTTTCTTGGTGGTAACAAACCCTCGAGGACTGGTAATGTGCGTGGTGATATCACAGTAAATTTCTCTTGTGATCCAGATAGTTCATGGAGGCTGGTTGGTCTTTCTCTTGATGAGATGCTGTGTCTGCAAGAACAAGGGCCTTCAGATTTGGATGTCTCAAGTATCCTTGAAATTGAGCAAAGGGCATATGAGAATGGATTACAGGAAAATGGATATTGGCTTGATCGAATTCTGCGTGGTTATCAATCTCGATTCTATGCTGGTGACCTTAATGTGTCTCTTAAGGCCCAGGATGAATGGCGCAACAAAGTCAGATCTTCCTTAACAAAAGTAACAATGCAAGAAGCATTGCAGAGGATATTGCCATCACCATGCACAAAACAATATACAGTAGTTGTACTTATGCCAAAATTACCTAGGTTGCAAAGATTGAAGTCTTTCCTGTTCAGTGGAGAGAAAAGATTGGGCATAGAAGGAAAGGTTTTGATCGGCACCGCTGGTACACTAGTGTTGGCTGCATTTTGGTGGAAGTATTCAAGGGCCAAAAATGTTACATAA___GAATCTGCTCCAAGACCCTCTCCTTTCAGTTGAGATATTCAGTTGCTATGGTTACTTTATTAGTGGTATGGTGGCTGCACGGATGGTGTTGCTCTACATTATGATGAAAGTGCCTGTGGCAACCATATTGAAAGGCAGCACGACCTTCTTGATCAAAAAGATGAGATTTGTTCAATATAAATATCTTTTGTAGCATGGTTTTGTTGGTTATAATATAGGTGCTTCTGATTTGTCAAAAGATGAACAGAACTTTTGCATCTTCAAAGGAAGAGCTGTGCCATTCAGATGCTATTGAATTTACTCTCTTCTATCTACCAGATAACGATTAATCTACCTGAAGAACCTTCAGTGGTGGTGGACTTGTATCGAATGAAAGACACTCATACCTCTTATACAACATGCTTTAGTTCTATCTGAGGCAATTAACCTAGCAATTTCAGGGATCAAGAGGACATTTATCCTGTTTAACTATTATTGATTTGTTTTCAAACATTCTTTTGGCTTATTCAATT

Fln Alignment:

sp_v1.1_unigene14268___MHFHRDELKALPFTFPKSVVREVVRSQMVEAQCSVQITFPVDLKGPHVMEEIHFVGFLSKLLETRIMQVLRFKHGQIYSVNVSVFLGGNKPSRTGNVRGDITVNFSCDPDSSWRLVGLSLDEMLCLQEQGPSDLDVSSILEIEQRAYENGLQENGYWLDRILRGYQSRFYAGDLNVSLKAQDEWRNKVRSSLTKVTMQEALQRILPSPCTKQYTVVVLMPKLPRLQRLKSFLFSGEKRLGIEGKVLIGTAGTLVLAAFWWKYSRAKNVT
D5AC43_______________MHFNRDELKALPFTFPKSVVREVVRSQMVEAQCSVQITFPVELKGPHVMEEIHFVGFLSKLLETRIMQVLRFKHGQIYSVNVSVFLGGNKPSRTGNVRGDITVNFSCDPDSSWRLVGLSLDEILCLQEQGPSDGDVSTILEIEQRAYENGLQENGYWLDRILRGYQSRIYAGDLNVSLKAQDEWRNKVRSFLTKVTMQEALQRILPSPCTKQYTVVILMPKLPRLQRLKSVLFSGEKRLGIEGKVLIGTAGTLVLAAFWWKYSRARNVT

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
927	14	85			0.993533
932		16		83	0.994512
936		83	16		0.994512
975	16	83			0.994512
978	83		16		0.994512
1018	83		16		0.994512
1051		90	10		0.90298
1106	90			10	0.90298
1107	90			10	0.90298
1108	90	10			0.90298
1110	88		11		0.923564
1114	11		11	77	0.968132
1118			11	88	0.923564
1119	88		11		0.923564
1120	88	11			0.923564
1121		11	88		0.923564
1188	14		85		0.993533
1224	87		12		0.992554
1225			12	87	0.992554
1267		12		87	0.992554
1323	80		20		0.995493
1357	80		20		0.995493
1529		33		66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain