SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14265

Length: 2254 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14265
CGTCGTGACCTTGGCTGTCACTCAATTTTGACGACGCACAAGTACTGGTGGTCTTTTTCTGTCGGCATGTAGATCAATGTTTATTCCACGTTTCTGAATACTATAAATTGAGGAATAAGCCCCACAGGCATTTCACGAAGTCGAAGCAAGAATTTTCCTCAGCCAAGAGCGCGGAGAGAAGAGTAAGATTGTGTACAGAAGCGCCCAGGAAGAAAGAGGGCTGCAGCACAAAGGGCCACGGATTCAGAAGGATACAGGAAATGAGAGGAATGAAATTTCATTTGGGTTTAGTAATCACTGTAATATTTGCAATTAGTGTAAGTGTTAAGGGCCAACTGCATGATTTTTCTAATGGAGAGTTTGATGTGCGCCAATATCTCTCCACTTCATCCAGATATGGTGCTGGAAAAGAAGCAATGAATGATGATTATCAAAATTCCGCAGTGCCTCCCAATGGATGTACTCCGATTCTTTTAAATCTTGTGGCCAGGCATGGAACTCGTGCACCGACCAAGAAGCGCATAAAGGAGCTAGTGCAATTATCTATACGTTTGGAGAGTCTTTTGAAGTCTGCAGATGATACACTTACAGGGGAAACACATGGTTCACAACAAATACCATCATGGCTGAGGGGCTGGCAATGTCCCTGGGACATAAAGAAAACAAATGGAGAATTAACACGTGAAGGTGAGGAAGAGTTGTATAATCTGGGAATGAGGTTAAGGGAAAGGTTTCCCCAGATATTTGATGAAGATTATCATCCTGATGTTTACTTGATAAGTGCAACTCAGGTCCCTCGTGCTTCAGCTAGTGCAGTTGCATTTGGCATGGGGCTTTTTGCTGGGAAAGGAGTTCTTGGAGCAGGCCAGCATCGTGCATTTGCTGTTATATCTGACAGTCGAGCAAATGATATCCATTTGCGATTTCATGATACTTGCCAAACATACAAGGAGTTCAAGAAGAAGCGCAAGCCTGCTTTAAAAGGATTACTATTTCCGGTTTATGCTGAAGTTTCAGCTTCATTGGTAAAACGCTACAATCTGAACTTTACAAAAGATGATGTGGCTTTACTTTGGTTTCTTTGCAGGCAGGAAGCAGCTTTACTAGACAAAACTGATCAAGCGTGTGGACTTTTTACCCAAATGGAGGTTGAACTACTTGAATGGGTTGATGATTTGGTGCTACATTATCTTAAAGGATATGGAGAATCAATAAATTATCAGATGGGGGTACCATTACTACAAAATATTGTGCAGTCAATGGAGCAAGCTATTTTAATGAAAAATGATCCTAATATTCCAGCAGCTGTGGAGAAGGCCCGGTTACGATTTGCTCATGCAGAGACCATCATACCATTCTCTTGTCTCCTTGGTCTATTTCTTTCTGCCTCTGATATAGAAAGAATTCAAAGGGAGCAGCCTTTGGAGCCTCCACCAAAACCCCCTCAAGAGCGGAGATGGAGAGGAAGTACAGTTGCACCTTTTGCAGGAAACAACATGCTTGTCCTATACAAATGCCCAGTCCAAGGGGGTAGTACTGGAAAGGTTATGGCGCCAGAAGAACCGAGTAACAGCTTTTTTGTTCAAATTTTACACAATGAAAAGCCAGTCTCTATTCCGGCTTGCAATGGAACTTATTTTTGCCCATTTGAAGATTTTAAGGAAAGAGTTGCAGGACCACATCTGAGACACACATTTGAATCATTGTGTACTGTTAAGGTTAAAAATGCAGATTGCCCCTTAACTTGCAGGATATCTAGGTTTTTCCAGTGGTTATTTCTAAGAAAGGGATACAAGCTCCATTCTTATGAAGATAAAGATGAGTTGTGATAGTTTCATTTCATGTTTTAGGAAGTTTTGAACTCGAAATTATTTTTGTTAATCTTAATTGCCATTTTATCACCTTAATCTCAACTAGTAATATTGCTAAAAACATTACGAAATATTAAGTGTTGTTCCATAACTTCGACAGAGAGATTTTGTGCACACTTAATTTCAGCATTGCTCCGGAACCGTGGAGTTAGCATGCATTGCTTTACAACGATATGTTACATGAGTTAGATAAGATTGTGATGGGGCTTTGAAAGCATGACATTGTTAGCGATTTTACTGTTCGTCTTTACGTCTTAAACTAGCATATAAATATCTTTGGGATATATTCATTAGCCTAAGAAACATGTAGTTAGTTGCGTGGATTGTAAATGTTTATACTGTATATTGTACTATCATGTGAATAATGTAGAGTAATGTGTTAG

Ace file of the UniGene sp_v1.1_unigene14265 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multiple inositol polyphosphate phosphatase 1 precursor, putative (EC:3.1.3.62)	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	histidine acid phosphatase family protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	71%
Blast2go	Riboflavin metabolism	00740		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histidine phosphatase superfamily, clade-2	IPR000560	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACK4

Fln msg: your sequence is longer than subject: 523 - 228

Fln protein: MRGMKFHLGLVITVIFAISVSVKGQLHDFSNGEFDVRQYLSTSSRYGAGKEAMNDDYQNSAVPPNGCTPILLNLVARHGTRAPTKKRIKELVQLSIRLESLLKSADDTLTGETHGSQQIPSWLRGWQCPWDIKKTNGELTREGEEELYNLGMRLRERFPQIFDEDYHPDVYLISATQVPRASASAVAFGMGLFAGKGVLGAGQHRAFAVISDSRANDIHLRFHDTCQTYKEFKKKRKPALKGLLFPVYAEVSASLVKRYNLNFTKDDVALLWFLCRQEAALLDKTDQACGLFTQMEVELLEWVDDLVLHYLKGYGESINYQMGVPLLQNIVQSMEQAILMKNDPNIPAAVEKARLRFAHAETIIPFSCLLGLFLSASDIERIQREQPLEPPPKPPQERRWRGSTVAPFAGNNMLVLYKCPVQGGSTGKVMAPEEPSNSFFVQILHNEKPVSIPACNGTYFCPFEDFKERVAGPHLRHTFESLCTVKVKNADCPLTCRISRFFQWLFLRKGYKLHSYEDKDEL*

Protein Length: 524

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGACGACGCACAAGTACTGGTGGTCTTTTTCTGTCGGCATGTAGATCAATGTTTATTCCACGTTTCTGAATACTATAAATTGAGGAATAAGCCCCACAGGCATTTCACGAAGTCGAAGCAAGAATTTTCCTCAGCCAAGAGCGCGGAGAGAAGAGTAAGATTGTGTACAGAAGCGCCCAGGAAGAAAGAGGGCTGCAGCACAAAGGGCCACGGATTCAGAAGGATACAGGAA_-_ATGAGAGGAATGAAATTTCATTTGGGTTTAGTAATCACTGTAATATTTGCAATTAGTGTAAGTGTTAAGGGCCAACTGCATGATTTTTCTAATGGAGAGTTTGATGTGCGCCAATATCTCTCCACTTCATCCAGATATGGTGCTGGAAAAGAAGCAATGAATGATGATTATCAAAATTCCGCAGTGCCTCCCAATGGATGTACTCCGATTCTTTTAAATCTTGTGGCCAGGCATGGAACTCGTGCACCGACCAAGAAGCGCATAAAGGAGCTAGTGCAATTATCTATACGTTTGGAGAGTCTTTTGAAGTCTGCAGATGATACACTTACAGGGGAAACACATGGTTCACAACAAATACCATCATGGCTGAGGGGCTGGCAATGTCCCTGGGACATAAAGAAAACAAATGGAGAATTAACACGTGAAGGTGAGGAAGAGTTGTATAATCTGGGAATGAGGTTAAGGGAAAGGTTTCCCCAGATATTTGATGAAGATTATCATCCTGATGTTTACTTGATAAGTGCAACTCAGGTCCCTCGTGCTTCAGCTAGTGCAGTTGCATTTGGCATGGGGCTTTTTGCTGGGAAAGGAGTTCTTGGAGCAGGCCAGCATCGTGCATTTGCTGTTATATCTGACAGTCGAGCAAATGATATCCATTTGCGATTTCATGATACTTGCCAAACATACAAGGAGTTCAAGAAGAAGCGCAAGCCTGCTTTAAAAGGATTACTATTTCCGGTTTATGCTGAAGTTTCAGCTTCATTGGTAAAACGCTACAATCTGAACTTTACAAAAGATGATGTGGCTTTACTTTGGTTTCTTTGCAGGCAGGAAGCAGCTTTACTAGACAAAACTGATCAAGCGTGTGGACTTTTTACCCAAATGGAGGTTGAACTACTTGAATGGGTTGATGATTTGGTGCTACATTATCTTAAAGGATATGGAGAATCAATAAATTATCAGATGGGGGTACCATTACTACAAAATATTGTGCAGTCAATGGAGCAAGCTATTTTAATGAAAAATGATCCTAATATTCCAGCAGCTGTGGAGAAGGCCCGGTTACGATTTGCTCATGCAGAGACCATCATACCATTCTCTTGTCTCCTTGGTCTATTTCTTTCTGCCTCTGATATAGAAAGAATTCAAAGGGAGCAGCCTTTGGAGCCTCCACCAAAACCCCCTCAAGAGCGGAGATGGAGAGGAAGTACAGTTGCACCTTTTGCAGGAAACAACATGCTTGTCCTATACAAATGCCCAGTCCAAGGGGGTAGTACTGGAAAGGTTATGGCGCCAGAAGAACCGAGTAACAGCTTTTTTGTTCAAATTTTACACAATGAAAAGCCAGTCTCTATTCCGGCTTGCAATGGAACTTATTTTTGCCCATTTGAAGATTTTAAGGAAAGAGTTGCAGGACCACATCTGAGACACACATTTGAATCATTGTGTACTGTTAAGGTTAAAAATGCAGATTGCCCCTTAACTTGCAGGATATCTAGGTTTTTCCAGTGGTTATTTCTAAGAAAGGGATACAAGCTCCATTCTTATGAAGATAAAGATGAGTTGTGA___TAGTTTCATTTCATGTTTTAGGAAGTTTTGAACTCGAAATTATTTTTGTTAATCTTAATTGCCATTTTATCACCTTAATCTCAACTAGTAATATTGCTAAAAACATTACGAAATATTAAGTGTTGTTCCATAACTTCGACAGAGAGATTTTGTGCACACTTAATTTCAGCATTGCTCCGGAACCGTGGAGTTAGCATGCATTGCTTTACAACGATATGTTACATGAGTTAGATAAGATTGTGATGGGGCTTTGAAAGCATGACATTGTTAGCGATTTTACTGTTCGTCTTTACGTCTTAAACTAGCATATAAATATCTTTGGGATATATTCATTAGCCTAAGAAACATGTAGTTAGTTGCGTGGATTGTAAATGTTTATACTGTATATTGTACTATCATGTGAATAATGTAGAGTAATGTGTTAG

Fln Alignment:

sp_v1.1_unigene14265___HYLKGYGESINYQMGVPLLQNIVQSMEQAILMKNDPNIPAAVEKARLRFAHAETIIPFSCLLGLFLSASDIERIXXXXXXXXXXXXXXXXRWRGSTVAPFAGNNMLVLYKCPVQGGSTGKVMAPEEPSNSFFVQILHNEKPVSIPACNGTYFCPFEDFKERVAGPHLRHTFESLCTVKVKNADCPLTCRISRFFQWLFLRKGYKLHSYEDKDEL
D5ACK4_______________HYLKGYGESINYRMGVPLLQNILQSMEQAILMKQDPQIPAAVEKARLRFAHAETIIPFTCLLGLFLSASDIERIQSEQPLEPPSKPPQQRRWRGSTVAPFAANTMLVLYKCPAQEGSTGKVMVPEELTNSFFVQILHNEEPVSIPGCNGSYFCPFEVFKERVAGPHLRHTFESLCTVKVTHADCPLTCRISRFFQWLFLRKGYAPHSCEDKDEL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1383		75		25	0.996473
1389		25		75	0.996473
1390		25	75		0.996473
1393	25	75			0.996473
1405	33	66			0.997452
1556		80		20	0.995493
1716	87		12		0.992554
1718			12	87	0.992554
1728		12		87	0.992554
1729	12	87			0.992554
1730	12	87			0.992554
1731			12	87	0.992554
1732			12	87	0.992554
1735		14		85	0.993533
1746	14		85		0.993533
1893		12		87	0.992554
1971		62		37	1.0
1972		62	37		1.0
1973	37	62			1.0
1974	62		37		1.0
1975	62			37	1.0
1977		30		70	1.0
1979	70	30			1.0
1982			30	70	1.0
1983			30	70	1.0
1987	8	16		75	0.99999
1988			16	83	0.999991
1989	25	75			1.0
1991	8		16	75	0.99999
2123		9	90		0.999872
2124	90	9			0.999872
2141	53		6	40	1.0
2202	72			9	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain