SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14250

Length: 1329 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14250

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF2053 domain containing protein	-	-	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	87%
Blast2go	seven transmembrane domain protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9P9X3

Fln msg:

Fln protein: MTLFHFFNCAALTFGPHAVYYTATPLSEYDTVGTCVKAALVYLGTTLIKLVCLATFLQVSDNDSFDPYQELLKAFIGFLDVAGLYFALTQLTHRNISQNHKFQAIGLGWAFADSLLHRLAPLWVGAKGLEFTWDYLLQGLESNANLVLTVSLAALGSLMWLRKNKPKALVPIIYASAGILASMPSITSYLRRGLGWDFESVVGFELFSSLLMAFISWQLFSACQKPSQ*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTTTTACAAATTCTTAGTCTGAATCGTTGGCTGAAGCTTTTTTAGTAGCGACCAGAGTAGAAGAAA_-_ATGACGCTGTTCCACTTCTTCAACTGTGCAGCTCTCACCTTCGGGCCTCACGCTGTCTATTACACAGCCACTCCGCTATCTGAATATGACACTGTTGGAACATGCGTAAAAGCAGCTCTTGTCTACCTTGGCACCACTTTGATTAAGCTCGTGTGCCTTGCAACCTTCCTCCAAGTTTCAGATAATGACAGCTTTGATCCATATCAGGAGTTGTTGAAGGCATTCATTGGATTTCTTGATGTGGCTGGGTTGTATTTTGCACTCACACAGTTGACGCATAGAAACATTTCTCAAAATCATAAATTCCAAGCTATTGGACTTGGATGGGCATTTGCAGATTCTTTATTACATAGATTGGCACCTCTATGGGTTGGAGCTAAGGGATTGGAGTTCACATGGGATTACCTTCTCCAGGGTCTCGAGTCAAATGCAAATCTGGTGCTAACTGTGTCACTTGCTGCATTAGGATCCTTAATGTGGCTTCGCAAGAATAAGCCAAAGGCATTGGTTCCAATCATATATGCAAGTGCTGGTATTCTTGCATCTATGCCTTCTATTACAAGCTACTTAAGAAGGGGTTTGGGATGGGACTTCGAGAGTGTGGTTGGATTTGAATTATTTTCATCATTATTGATGGCATTCATCAGCTGGCAACTTTTTAGTGCTTGTCAAAAGCCTTCACAGTAG___GATTGAATCATTGAAAGATTGTCTTTCAGGTCCTATTCTGTGTTGTATGCTAGATACTGATAGATTCAGTTCCATTACATCAAAAGGCGAGACCAAACAGAGATTATCAACAAACCATTCTGGAAGGGGTGGCGGGAACATTTTTGTCATTAACTGATGAATAATAGTGAATGGATTTCACAATGTTTTGAAAGCTGCCGATAGAGCAGTTTAGTTCAATTTCAAGGAACATAACATTTCATTATAGTTTCAGTCCTAAAACATCTCCGTTGTTGGTTGAATTCAGTTTTTAAGCATGGTTGTTATTTGTAGATATCCACTTTACGAGGATGGATACTAGTATAGTTATGTGCACCAATATCAAATTAATTTTAACTCCTTTCTGATATCCTATTCGAATGTCCAACCGTCCTAATAGATATCTCCAAGCTCCCTAATCATAATCATGAAAGCAGTTTCAATTTATTGGCTGCTATTTTGTATCCTTATTATGGCTTGTACTTTTTTATGCAAATTCCTTGTATCAAAATGTGCTCAAGGTTTGTTATG

Fln Alignment:

sp_v1.1_unigene14250___MTLFHFFNCAALTFGPHAVYYTATPLSEYDTVGTCVKAALVYLGTTLIKLVCLATFLQVSDNDSFDPYQELLKAFIGFLDVAGLYFALTQLTHRNISQNHKFQAIGLGWAFADSLLHRLAPLWVGAKGLEFTWDYLLQGLESNANLVLTVSLAALGSLMWLRKNKPKALVPIIYASAGILASMPSITSYLRRGLGWDFESVVGFELFSSLLMAFISWQLFSACQKPS
A9P9X3_______________MTLFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDSFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGSRGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYACAGIVATMPSITSYLRRGLGWHFPKVVGFELFTSLMMAFISWQLFSACQRPS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
46		42		57	1.0
58	12			87	0.992554
62		87	12		0.992554
63			12	87	0.992554
865	23	76			1.0
968		6		93	0.99903
971		6		93	0.99903
972			6	93	0.99903
976	93	6			0.999153
977	93	6			0.999153
978			93	6	0.999153
982		93	6		0.999153
984			93	6	0.999153
985	93		6		0.999153
987	93	6			0.999153
988	6		93		0.999153
989	93	6			0.999153
990			93	6	0.999264
998	34		65		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain