SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14239

Length: 1053 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14239 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative	-	-	2.0e-31	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	plastid-specific 30s ribosomal protein 3	-	-	0.0	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	89%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	89%
Blast2go	ribosome	GO:0005840	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein PSRP-3/Ycf65	IPR006924	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRX5

Fln msg:

Fln protein: MGNDREGKEGTTMTMTIPSAFPLGSLSSRLLPAPCTIPSTCPCSPYPYARVIHFRPIGGIITSSVTAASGAITPRIRYGYGSLIQIPQMEKETGKRNRQCVILKAAQVETQSQPEPAQEEKEKGKVKVVVKTPRKQRVVLKFIWLEKNLGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWISQKRTIILLNQATDIINLWQQGGSNI*

Protein Length: 218

Fln nts: ATGGGGGGTGATAAGATAACAGGAG_-_ATGGGGAATGATAGAGAAGGCAAGGAGGGGACGACAATGACAATGACGATACCGTCTGCATTTCCACTGGGAAGTCTTTCATCCAGACTTCTTCCAGCGCCATGCACCATTCCTTCTACTTGTCCCTGCTCTCCTTATCCTTATGCACGTGTAATTCATTTTAGGCCCATAGGAGGCATTATTACAAGCTCTGTTACTGCTGCGTCTGGTGCCATTACACCTAGAATTAGGTATGGATACGGGTCTCTCATCCAAATCCCACAAATGGAAAAGGAAACGGGAAAGAGAAATCGACAATGTGTGATTCTCAAAGCAGCCCAAGTGGAGACTCAGTCACAGCCAGAGCCTGCACAAGAAGAGAAGGAGAAGGGTAAGGTTAAGGTGGTGGTGAAGACTCCCAGGAAGCAGAGGGTTGTATTGAAGTTCATTTGGCTTGAGAAGAACCTAGGGCTTGCTCTAGATCAGGTGGTTCCTGGGCATGGGACTATTAGCCTAAGTCCTTATTACTTTTGGCCCAGGAAGGATGCATGGGAAGAACTCAAAGCCAAGCTGGAGAGCATATCCTGGATATCTCAAAAGCGCACAATAATTCTTCTTAACCAGGCGACGGATATCATTAACTTGTGGCAGCAAGGTGGAAGCAATATATAA___CGATTCAATTCAGATAGAGCAATGTATGTATGCACATGCTGTTTCTGACTATGATACTTTTTTTGCTAATCCATGGGGATTTTGAATCGATGATGTATTGCAAGGAGAAGCGACTTAACAGTGCACAGTCAATCCAAAACCCAGTGGGCTCTGCTTCTGACTAGCTTCATCTATGAAGCTGCAGTTAATTGTATTTTAATTTAAATTAAAGGCCCTCCAATCCTATAGTCAGTATAAGCCAATCCAGTTCTAAGTTGACTTGGCTGTCTTATGTATTCTCTTGAGTCTTAGTTTTGCTATTTTGTATTTTGGAGGAAGAGGTTATTACCCTAAAATAATCCTCTTGAGTCTTAGTTTTGCTATTTTTTATTTTGGAG

Fln Alignment:

sp_v1.1_unigene14239___MTMTIPSAFPLGSLSSRLLXXXXXXXXXXXXXXXXXA---RVIHFRPIGGIITSSVTAASGAITPRIRYGYGSLIQIPQMEKETGKRNRQCVILKAAQVETQSQPEPAQXXXXXXXXXXXXXXXXXXXXVLKFIWLEKNLGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWISQKRTIILLNQATDIINLWQQGGSNI
A9NRX5_______________MTMTITSAFALGSLSSRLLPSPCNIPSTCTCSPVSSSSYARAIHFRPVQAIISSSVAAASGAITPRI--GYGSLIQIPQTEKERGKKNQQCVVLKAAQVEALSEPEPALEEKEKGKVKVVVKTPRKQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQKRTIILLNQATDIINLWQQVGSNI

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
108	81		18		0.999994
146		63	36		1.0
168		50		50	1.0
187		80		20	0.999996
188	80		20		0.999996
190			16	83	0.999991
192	83		16		0.999991
195	16			83	0.999991
197		75		25	1.0
199	16		83		0.999991
200		83	16		0.999991
201			16	83	0.999991
205			16	83	0.999991
227	88			11	0.923564
231		87	12		0.992554
232	12	87			0.992554
236		12		87	0.992554
237	12		75		0.975346
238	12		87		0.992554
240			14	85	0.993533
242		14		85	0.993533
243	14			85	0.993533
244		14	85		0.993533
248		14		85	0.993533
351	12	87			0.992554
352	87		12		0.992554
354	87		12		0.992554
519	83		16		0.994512
570		83		16	0.994512
702		16		83	0.994512
801		14		85	0.993533
840	85		14		0.993533
861		14		85	0.993533
933	30	70			1.0
962	88	11			0.923564
963		11	88		0.923564
964		11		88	0.923564
965	11		88		0.923564
966			88	11	0.923564
978		28	71		1.0
993	71	28			1.0
994		28		71	1.0
995		28		71	1.0
996	28		71		1.0
1018		20		80	0.995493
1020	60	40			1.0
1021		40		60	1.0
1024	20			60	0.99255
1029		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain