SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14226

Length: 900 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14226

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter I family member 17 n=3 Tax=Arabidopsis RepID=AB17I_ARATH	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	abc transporter-like protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphate-transporting ATPase.	EC:3.6.3.27	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	phosphate ion transport	GO:0006817	Biological Process	80%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	80%
Blast2go	phosphate ion transmembrane-transporting ATPase activity	GO:0015415	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	membrane	GO:0016020	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1602	IPR011633	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 248 - 268

Fln protein: MELNELGDEQQLLRGIDEDDLEEGFMGNGDRHPKIRVKNLWRKTEEGTSLLSGVSVDIWKGTVVGVIGPSGGGKSTFLRALNRLWEPPVDSVFLDNHDISNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYLSLADLESSLAARSASSLSVGQAQRVALARALANEPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSVKQVQRIADLVFLLVDGQIVRL*

Protein Length: 249

Fln nts: ATGGGGATGGGAAGAACGGTCGGGCTTTTACAGAGCTCGCTCTTCCACTGGTTTTAACCCAAATTGTTTCTTGAATCGCCGGTGACAGGTAGCTGATATTTTCATTGTGATTGGGTCGCACATCGATTCTATCA_-_ATGGAACTCAATGAGTTGGGAGACGAGCAGCAGCTGCTGCGCGGCATCGATGAGGACGACCTGGAGGAGGGGTTTATGGGCAATGGTGATCGCCATCCGAAGATAAGAGTCAAAAATCTTTGGAGGAAGACGGAGGAGGGGACGAGCCTTCTGTCGGGCGTGTCGGTGGACATATGGAAGGGAACGGTGGTGGGCGTAATAGGGCCCAGCGGAGGCGGAAAGTCGACATTCCTGAGGGCACTGAACAGGCTCTGGGAACCGCCGGTCGATTCCGTCTTCCTCGATAACCACGACATCTCTAACCTCGACGTGCTCGCCCTCCGCCGCCGTGTGGGTATGCTCTTCCAGACGCCAGCCCTCTTCGAAGGAAGCGTTGCGGATAACATAAGGTACGGGCCGGCGCTCCGCGGGGAGAAATTGTCGGACGAGAAGGTAGTTGAGTATTTGAGCCTTGCGGATTTGGAATCCTCTCTGGCCGCCAGATCCGCCAGCAGTTTGTCCGTGGGGCAGGCGCAGAGGGTGGCCTTGGCCAGAGCTCTCGCCAACGAGCCTGAGGTGCTGCTGCTGGACGAGCCGACGAGCGCCCTGGATCCCATATCCACTGAGCACATCGAGGAGTCGATTGGGAAGCTGAGAAGGGAGAAGGGGATGACCATTATCATGGTCTCCCACAGTGTCAAACAGGTTCAAAGAATCGCCGACCTCGTCTTTCTGTTGGTGGATGGGCAGATTGTGAGACTCTGA___AACCCGACCAGCTCTGCAATGC

Fln Alignment:

sp_v1.1_unigene14226___QQLLRGIDEDDLEEGFMGNGDRHPKIRVKNLWRKTEEGTSLLSGVSVDIWKGTVVGVIGPSGGGKSTFLRALNRLWEPPVDSVFLDNHDISNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSVKQVQRIADLVFLLVDGQIVRL*NP
D5ADF3_______________EELLLRIDEEDAEAS--RNGDLHPKMSVRDLRRKSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGNVADNIKYGPALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
585		88		11	0.923564
713	14		85		0.993533
755			85	14	0.993533
819	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain