SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14221

Length: 1316 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene14221 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S922_RICCO	-	-	67%
FL-Next	tr=Os07g0595800 protein; Oryza sativa subsp. japonica (Rice).	-	-	69%
Blast2go	protein binding	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	74%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	74%
Blast2go	prefoldin complex	GO:0016272	Cellular Component	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q84JS9

Fln msg:

Fln protein: MEGEYVKMEKVHKFEEFVDRRLKPDLVNAMAERDKVLEQQKIFSDLKTNIQMLESNGLTRLRTMVNLGSEVYVQADVTLILAHIFVDIGLGFYAEFTWSEALQFISTKEKALSRQAEDYTRQIANIKAQIKLVCEGIRELLNIPADDHGSGSKR*

Protein Length: 156

Fln nts: ATGGGGATGGGGATGGTTATTACCAGAGCTAAGCGGCACGCAGTAGGTTTCTCATGTCTGGGATTTGAAAGCTCGCTGTTAAAACTGCTCGTCATCACGTAACCTTCAAGTTAATTGCATACAGGCATCATAATAGAATTTTCTGGGAGGCGGCGGGGATTCTCACAATTGGAATTTGAAAACTGTCTTGTGGAGCTCCTCGACATTTAGTTCTTACATTATAATAGCCTTTCTTTTGTTATAGACTGCTTGGTTGGCA_-_ATGGAGGGAGAATATGTGAAGATGGAGAAGGTGCACAAATTCGAAGAATTCGTGGACCGTCGCCTCAAGCCAGACCTCGTCAATGCCATGGCAGAAAGGGACAAGGTGTTGGAGCAACAAAAAATTTTCTCTGACCTGAAAACGAATATTCAAATGCTGGAGAGCAATGGACTGACAAGACTTCGAACAATGGTGAATTTGGGTTCTGAAGTCTATGTACAGGCAGATGTGACCCTGATACTCGCTCATATTTTTGTTGACATTGGGTTGGGATTCTATGCGGAGTTTACATGGTCTGAAGCCTTGCAGTTTATATCCACAAAGGAAAAGGCACTTTCAAGGCAAGCTGAAGATTATACTCGTCAAATTGCAAATATCAAAGCACAAATCAAATTGGTTTGTGAAGGTATCAGGGAACTACTCAATATTCCGGCGGATGATCATGGTTCAGGAAGTAAGCGTTAA___AATGGATTAAAAATTATTAGTGGAGGCATTTTTCAATGGAACCTACAGGTACCGGAAAAAAGATAAGAGGAACATGCTTCTCTACTTGTGTTGATTGTTTGCTCGGCAGTATATTGAAGAGGCAAAATGTTTAATTGCACCTCTTCACTAGCATCCCGATTACGTAATCCTTAATGTAAATTATATAACTAAATTAAGGAGTATGAAATGATGTGATATATATGTTACACTATCTCAGAATTTTTGAAATTTAAATTCTTTTTTGAGAAGCAGGATACTTTTACAAACCATAAATAATCGGCTATGGGACTTTTGGAATTTTGACTCAAGTGGATGTTAGTAGTAATATTGAAGTTGAATCAAAGTGGGGAAAGCTTATAACTTGAGTTACGATTTGATTGCTATTTATTCTTCAGGAAATATGTAAAAACCCTTATTTCGTATCTTGTTCAGTGCAACAAAATGGGTTGAAATGTTGCACAACTTCACTTCCCATGCAACTCCTAGCCATGGATTGAAATTTCATTGTATCTGAAGATTGTTGAGAAGAAAAAATGCGAAACTCAGAATAAAATAACAATAATGAACTTAG

Fln Alignment:

sp_v1.1_unigene14221___VKMEKVHKFEEFVDRRLKPDLVNAMAERDKVLEQQKIFSDLKTNIQMLESNGLTRLRTMVNLGSEVYVQADVTLILAHIFVDIGLGFYAEFTWSEALQFISTKEKALSRQAEDYTRQIANIKAQIKLVCEGIRELLNIPAD
Q84JS9_______________VRQEKVKKFEDFVDRRLKPDLVNTIAQRDKVFQQQKTFLDLKRNIENLEKNGVTSMRSMVNLGSEVYAQAEVP-DTRHIFVDIGLGFHVEFTWQEALQFISVRESRLARQIDEYTHLIASIKAQIKLVCEGIRELLELPAE

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
340			20	80	0.995493
342	80		20		0.995493
345			20	80	0.995493
346	25			75	0.996473
349	75		25		0.996473
350	75	25			0.996473
353			25	75	0.996473
354			25	75	0.996473
355		50	25	25	0.995533
356	25	25		50	0.995533
357	25		75		0.996473
358	50	25		25	0.995533
361		50		50	1.0
364		33		66	0.997452
365		33	66		0.997452
369		66	33		0.997452
370	66		33		0.997452
372	66	33			0.997452
373	33			66	0.997452
374	66	33			0.997452
375			33	66	0.997452
377		33		66	0.997452
378		66	33		0.997452
644		83		16	0.994512
789	86		13		0.999973
814		54		45	1.0
817		45	54		1.0
818	45			54	1.0
819	54		45		1.0
820		45		54	1.0
823	45			54	1.0
830	54		45		1.0
831	45			54	1.0
906		14		85	0.993533
1156	83		16		0.994512
1158		16		83	0.994512
1159	16	83			0.994512
1160		83	16		0.994512
1163	16		83		0.994512
1164	33	66			1.0
1165		83	16		0.994512
1167		83		16	0.994512
1169	16			83	0.994512
1171		83	16		0.994512
1172	16	83			0.994512
1173	83	16			0.994512
1259	83	16			0.994512
1260		16	83		0.994512
1261	83	16			0.994512
1276			20	80	0.995493
1288	80	20			0.995493
1289		20	80		0.995493
1291		20		80	0.995493
1292	20	80			0.995493
1306	33	66			0.997452
1307	33	66			0.997452
1308		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain