SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14220

Length: 2026 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14220
AACTCAAGTCCCACTAGGCCACCCAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCGCAACACCATGAAGCGATTTGGAGAGAGCTCACCGTCACACACCGCGTGTGTTTTGCAGCACAAGACAGAGAACGTCAGGGATCTGTACACATTGGGCAAGAGACTGGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGGACCGATAAGGCTTATGCTTGCAAATCTATTGCCAAGAGGAAGCTTTTGTCCATTGAGGATGTGGAGGACGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCCCAATGTGGTTACCATAAAGGGGGCTTACGAGGATGTGGCCTCCGTTCATCTGGTCATGGAGTTGTGCGCCGGTGGGGAACTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCCGCTGAGCTCACCAGGACCATTTTGGGCGTGGTGGAGGCCTGCCATTCCCTGGGTGTTATGCACAGAGACTTGAAGCCCGAGAATTTCTTGCTTTCCAGCACGGACGAGGATTCAGCTCTCAAGGCCACGGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACATTTAGTGATGTGGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTATGCAAGAATTACGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATCCTGTACATTCTATTAAGCGGAGTTCCACCATTTTGGGGAGAAACAGAGAAGGGAATTTTTGATCAAGTTCTCCAGGGTGAACTTGACTTCGCATCAGACCCATGGCCTGGCATATCAGAGAATGCAAAGGATTTAATTAGAAGGATGCTTGATAGAAAACCCAAAAATCGCCCAACAGCTCATGAAGTGCTTTGTGACCCTTGGATTCGGGATGATGGGGTTGCTCCTGACAAACCTCTTGATTCTGCAGTGCTCTCTCGGTTGAAGCAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTCTTCGTGTTATAGCGGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAAGATGATTGATACAGACAACAGTGGTACAATTACCTTCGATGAATTGAAGGATGGATTAAACAGAGTTGGTGCTACTAATCTTATGGAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGCGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAACGCGAGGAGCATCTCTTTTCCGCCTTTTCTTATTTTGACAAAGATGGAAGTGGGCAAATTACTATGGATGAACTTCAGCAAGCTTGCCAGGAATTTGGTATAGGTGATGCTCAGCTTGATGAAATGATCAAAGAAGTCGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATCGGCAGAAAAACAATGCGGAACAGCTTAGGACTAAGGGATGCCTTAAAAATTGGTTAAAAGCTATGGAGAGCTATTCCTAGTCACAAGTTCAGAGGGCATTACATGCTCTGAGACTTTGCTTGTTAAATTAATTGCTTTGCTAATCCTGTGCCCTATCTGATCATGAATGATGCCTCAAAAGACTGCCAAGGTCCATAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAATATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTAAGTCCAGTTTTATCTAATTGCAAAGTAAGAGGTAGACAGGTTTGTTGGTTTAAGCCGTTTATTGATACAAGTCTAGTTCAAAATTGAGCTGTATTTTTTTTCTGCACAACAATAGATGATAAAGTTGTCATCCATGGAAGTTCGTTTTAGAAAATATGAGATTTTCCCTTTTTATCCTCTATTAACCAAGCTCCTTTGGTTGGAAGGTATAAACAATGAGCTAAAAAGGTCTAATGGTGTCTCAAAACGGTCATGCTGTCGT

Ace file of the UniGene sp_v1.1_unigene14220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RL17_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	calcium dependent protein kinase 1	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	87%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 490 - 529

Fln protein: MKRFGESSPSHTACVLQHKTENVRDLYTLGKRLGQGQFGITYLCIEKGTDKAYACKSIAKRKLLSIEDVEDVRREIQIMHHLAGHPNVVTIKGAYEDVASVHLVMELCAGGELFDRIIQRGHYSERKAAELTRTILGVVEACHSLGVMHRDLKPENFLLSSTDEDSALKATDFGLSVFFKPGETFSDVVGSPYYVAPEVLCKNYGPEADIWSAGVILYILLSGVPPFWGETEKGIFDQVLQGELDFASDPWPGISENAKDLIRRMLDRKPKNRPTAHEVLCDPWIRDDGVAPDKPLDSAVLSRLKQFSAMNKIKKMALRVIADSLSEDEIAGLKEMFKMIDTDNSGTITFDELKDGLNRVGATNLMESEIRELMEAADIDNSGTIDYGEFIAATLHLNKMEREEHLFSAFSYFDKDGSGQITMDELQQACQEFGIGDAQLDEMIKEVDQDNNGSIDYNEFVAMMRKGNGGIGRKTMRNSLGLRDALKIG*

Protein Length: 491

Fln nts: AACTCAAGTCCCACTAGGCCACCCAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCGCAACACC_-_ATGAAGCGATTTGGAGAGAGCTCACCGTCACACACCGCGTGTGTTTTGCAGCACAAGACAGAGAACGTCAGGGATCTGTACACATTGGGCAAGAGACTGGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGGACCGATAAGGCTTATGCTTGCAAATCTATTGCCAAGAGGAAGCTTTTGTCCATTGAGGATGTGGAGGACGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCCCAATGTGGTTACCATAAAGGGGGCTTACGAGGATGTGGCCTCCGTTCATCTGGTCATGGAGTTGTGCGCCGGTGGGGAACTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCCGCTGAGCTCACCAGGACCATTTTGGGCGTGGTGGAGGCCTGCCATTCCCTGGGTGTTATGCACAGAGACTTGAAGCCCGAGAATTTCTTGCTTTCCAGCACGGACGAGGATTCAGCTCTCAAGGCCACGGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACATTTAGTGATGTGGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTATGCAAGAATTACGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATCCTGTACATTCTATTAAGCGGAGTTCCACCATTTTGGGGAGAAACAGAGAAGGGAATTTTTGATCAAGTTCTCCAGGGTGAACTTGACTTCGCATCAGACCCATGGCCTGGCATATCAGAGAATGCAAAGGATTTAATTAGAAGGATGCTTGATAGAAAACCCAAAAATCGCCCAACAGCTCATGAAGTGCTTTGTGACCCTTGGATTCGGGATGATGGGGTTGCTCCTGACAAACCTCTTGATTCTGCAGTGCTCTCTCGGTTGAAGCAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTCTTCGTGTTATAGCGGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAAGATGATTGATACAGACAACAGTGGTACAATTACCTTCGATGAATTGAAGGATGGATTAAACAGAGTTGGTGCTACTAATCTTATGGAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGCGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAACGCGAGGAGCATCTCTTTTCCGCCTTTTCTTATTTTGACAAAGATGGAAGTGGGCAAATTACTATGGATGAACTTCAGCAAGCTTGCCAGGAATTTGGTATAGGTGATGCTCAGCTTGATGAAATGATCAAAGAAGTCGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATCGGCAGAAAAACAATGCGGAACAGCTTAGGACTAAGGGATGCCTTAAAAATTGGTTAA___AAGCTATGGAGAGCTATTCCTAGTCACAAGTTCAGAGGGCATTACATGCTCTGAGACTTTGCTTGTTAAATTAATTGCTTTGCTAATCCTGTGCCCTATCTGATCATGAATGATGCCTCAAAAGACTGCCAAGGTCCATAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAATATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTAAGTCCAGTTTTATCTAATTGCAAAGTAAGAGGTAGACAGGTTTGTTGGTTTAAGCCGTTTATTGATACAAGTCTAGTTCAAAATTGAGCTGTATTTTTTTTCTGCACAACAATAGATGATAAAGTTGTCATCCATGGAAGTTCGTTTTAGAAAATATGAGATTTTCCCTTTTTATCCTCTATTAACCAAGCTCCTTTGGTTGGAAGGTATAAACAATGAGCTAAAAAGGTCTAATGGTGTCTCAAAACGGTCATGCTGTCGT

Fln Alignment:

sp_v1.1_unigene14220___ENVRDLYTLGKRLGQGQFGITYLCIEKGTDKAYACKSIAKRKLLSIEDVEDVRREIQIMHHLAGHPNVVTIKGAYEDVASVHLVMELCAGGELFDRIIQRGHYSERKAAELTRTILGVVEACHSLGVMHRDLKPENFLLSSTDEDSALKATDFGLSVFFKPGETFSDVVGSPYYVAPEVLCKNYGPEADIWSAGVILYILLSGVPPFWGETEKGIFDQVLQGELDFASDPWPGISENAKDLIRRMLDRKPKNRPTAHEVLCDPWIRDDGVAPDKPLDSAVLSRLKQFSAMNKIKKMALRVIADSLSEDEIAGLKEMFKMIDTDNSGTITFDELKDGLNRVGATNLMESEIRELMEAADIDNSGTIDYGEFIAATLHLNKMEREEHLFSAFSYFDKDGSGQITMDELQQA-CQEFGIGDAQ-LDEMIKEVDQDNNGSIDYNEFVAMMRKG
C0PQ38_______________QSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLG-SQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
83			25	50	0.995533
84			25	75	0.996473
318	12		87		0.992554
366	10		90		0.90298
408	85		14		0.993533
918		84		15	0.999986
1058	85		14		0.999981
1790			25	75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain