SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14218

Length: 1809 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14218

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein cbxX, chromosomal, putative n=1 Tax=Ricinus communis RepID=B9RKQ5_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	82%
Blast2go	protein metabolic process	GO:0019538	Biological Process	82%
Blast2go	ATPase activity	GO:0016887	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWX5

Fln msg: your sequence is shorter than subject: 343 - 484

Fln protein: VEALLQYHADINAKDNEGMTPLSHLSHGPSNQKLQLLLQVHLDEQRKRKAREACEKSKNKMSLLEVELSRVVGLHELKVQLRTWAKGMILDEKRRALGLKVAARRSPHMAFLGNPGTGKTMVARILGKLLYMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTRNKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKVVVIFAGYAEPMKRVIASNEGFCRRVTRYFIFDDFSPTELAEIVQLKMNEQMESSLLYGFKLHETCSVEAIADLIIKSTTEKQRKELNGGLVGPMLVNARENLDLRLDLDCCDVENLVTITFEDLEAGIRLVSS*

Protein Length: 344

Fln nts: CAGTTGAGGCCTTACTCCAGTATCATGCTGATATCAATGCCAAGGATAATGAAGGCATGACTCCATTAAGTCATCTGTCTCATGGTCCTAGCAATCAGAAGCTGCAATTGCTGTTGCAAGTTCATCTCGATGAACAAAGAAAGCGGAAAGCCAGAGAAGCATGTGAGAAGTCCAAGAACAAGATGTCATTGCTGGAAGTAGAGCTGTCAAGAGTTGTGGGGTTGCATGAATTGAAGGTACAGCTACGAACATGGGCAAAGGGAATGATTTTGGATGAGAAACGACGGGCCCTTGGACTTAAAGTTGCTGCTAGGAGATCACCACACATGGCTTTCCTTGGAAATCCTGGGACAGGGAAAACAATGGTGGCCCGAATTCTTGGAAAACTTTTGTATATGGTTGGTGTTTTACCTACAGACAAGGTAACTGAAGTTCAAAGAACAGATCTAGTTGGAGAATTTGTTGGTCATACTGGCCCCAAGACTAGGAACAAGATCAAGGAAGCAGAGGGTGGAATACTTTTTGTTGACGAAGCATACAGGTTGATACCCATGCAGAAAGCAGATGACAAGGACTATGGTTTGGAAGCATTGGAGGAGATAATGTCAGTCATGGATAGTGGAAAGGTGGTGGTAATCTTTGCAGGATATGCTGAGCCGATGAAGCGTGTAATTGCCTCCAATGAGGGATTTTGTAGAAGAGTGACTAGATATTTCATTTTTGATGACTTCAGTCCAACAGAACTTGCTGAAATTGTGCAGCTGAAGATGAATGAACAGATGGAAAGCAGTTTGCTTTATGGTTTTAAGCTGCATGAGACATGCTCTGTTGAAGCAATTGCCGATCTAATTATTAAAAGTACAACAGAAAAGCAAAGGAAGGAGTTAAATGGAGGTTTAGTAGGCCCTATGCTAGTCAATGCTCGAGAGAACCTGGATCTCAGGCTTGACCTTGATTGTTGTGATGTAGAAAATCTTGTCACTATTACTTTTGAAGATCTTGAAGCAGGGATTAGGCTGGTTTCCTCATGA___AGTTTGTCCAGTACAAACGTGTTTATCAAAGTTTTTCCCACATGGATTGAGTTGTTGTGTTCAATCAATGGATGTTTCACAGCATGCAATTTTTTACTTTCAACGATGTTAGGTCTACAGACGACAATTACTAGTTGTTACGAACCTCAGGTTAGGTACACATTTTTTACACCCACAATCCTCAAGTTCTTTTTGCCCGCAAGAATTATGCGGCATCGAACAGAGTTTTGTAAACGATTTGAATAATATTATTGATTTTATTATTTCATTCCTAAAAGTTCATAGAAATCTGAACTTCTGGGAGTTGATGGGCCCACTGGCACTTTGAAGTGAGCTCGGGTAATTGGAGAATGATGAAATTCGACAGCAAATACAATTTTCTTACAGGTGATTAGCTTGAAAGGAGACCAGTTTATCTATGTGCTTGAGTAGTAATGACAGGATATGTTAATGTTGAACTGGCGAAGTTCAAGGTTCCAGTGTAACTTCATGCTTTTGAATACGCACAATCTCACTGTGGGCTGGGGAGCTGTGCATTTGCTGCATATTGGGAGCTCTGCACATAGAATGGAAAGCGTGTTATTGAAAAGAAGCACGTATATCTTTTTTGCCACTAATAAGGTGGTAGCGAGAACAAAACATTGTAAGACAAATTTAAGTTGATTATATTAATTCGTTTTGTAATGCACCTAATTAACCTTGGTCATTATTATTTTTGTAATGTACCTAATTAAGATTCGGCACATAGAATGGGAAACATGTTATTTAAAACGAACAC

Fln Alignment:

sp_v1.1_unigene14218___VEALLQYHADINAKDNEGMTPLSHLSHGPSNQKLQLLLQVHLDEQRKRKAREACEKSKNKMSLLEVELSRVVGLHELKVQLRTWAKGMILDEKRRALGLKVAARRSPHMAFLGNPGTGKTMVARILGKLLYMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTRNKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKVVVIFAGYAEPMKRVIASNEGFCRRVTRYFIFDDFSPTELAEIVQLKMNEQMESSLLYGFKLHETCSVEAIADLIIKSTTEKQRKELNGGLVGPMLVNARENXXXXXXXXXXXVENLVTITFEDLEAGIRLV
A9NWX5_______________VEALLQYHADINTKDNEGMTPLSHLSQGPSNQKLQSLLQVHLDEQRKRKAREACEKSKSKMSELEVELSRVVGLHELKVQLRTWAKGMILDEKRRALGLKVAARRSPHMAFLGNPGTGKTMVARILGKLLHMVGVLPSDKVTEVQRTDLVGEFVGHTGPKTRKKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSIMDSGKVVVIFAGYAEPMKRVIGSNEGFCRRVTRYFFFDDFSPRELAEIVQLKMNEQVESSLLYGFKLHETCSVKAIADLMIKNTTEKQRKELNGGLVGPMLVNARENLDLRLDLDCCDAENLITITFEDLEAGLRLV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
237	25		75		0.996473
239	75		25		0.996473
240		75	25		0.996473
241	75		25		0.996473
334	20			80	0.995493
335		80		20	0.995493
336		80	20		0.995493
337			20	80	0.995493
338			20	80	0.995493
447		58		41	1.0
717	85			14	0.993533
718	14			71	0.984337
975		87	12		0.999964
976		12		87	0.999964
1288	33			66	0.997452
1306	75	25			0.996473
1510	20	80			0.995493
1552			80	20	0.995493
1782	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain