SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14205

Length: 1678 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14205

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Porin n=1 Tax=Prunus armeniaca RepID=Q9XH72_PRUAR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	anion transport	GO:0006820	Biological Process	83%
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	83%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	83%
Blast2go	pore complex	GO:0046930	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Porin, eukaryotic type	IPR001925	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg:

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP*

Protein Length: 278

Fln nts: CGTCGTGACCGTCGTGACCTCAGCGGTAACTGCCACACTCCTTTGCAAACTATGTATCGGGTGGCACATATCTTGCTTGCATTCATCGACGGCTGTGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTTGTCTCTCCTAGGGTTTTAAGCAATCTTGGTGGGTTTGTAGAGAGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGGCTGTTTAACTCAAGGACGGTTTCCGTCTTCTGAAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAAGATCTGGAAAGGTTGAGCTTCAATATCTGCATGATTATGCAGGGGTCAGTGCAAGCATTGGCTTGACACCATCTCCAATAACACATTTCTCAGGAGCAATTGGAAATGATACTTTTTCTGTAGGGGGTGAAGTTTCGTTTGACACTGCATCGGGAAACTTCTTGAAATATGATGCAGGCTTGAGTTTTTCCAAGCCTGATTTCGTTTCTTCTTTGACCTTAACTGGTAAGGGTGACACCTTGAAGGCATCTTACTTGCATACTGTGAGTCCTCTGACAAAGACTGCTGTTGGAGCAGAGATATCACATAGCTTTTCAAGGAACGAGAATACGTTCACCATAGGCACTCAGCATGCTTTGGACCCACTGACAACAGTTAAGGGGCGCCTCAATAATTATGGAAGGGCAGCTGCAGTACTTCAGCATGAGTGGAGGCCTAAAAGTTTTGTTAATCTTTCTGGTGAGGTGGACACCAAAGCCCTTCACAACAGTGCAAAGGTGGGGCTATCTCTGGTTTTGAAGCCTTGA___AGGATATGCACTATTTGGTACAGATTTAAGCGAAGGTCTGTGCTAAATTTTGATTGGAATTTTTGAGTTTTTCCTTTCAGAATAATTATTTCAATGCCTGTGCTTTCTGTTGAGGCACAGAGCAGCTCAGCACCTTGACTTAATTAGCTATGTAATTTTGTGAGTCAGATGCTGTTAATTTTTTAAGGCACATGCTCTTGAAAATGGGTGTTGCCAAACATGGTTGGCTGGAGCTTCAATCTGGTTGAAAAGTTGTGAAACATTTTTGGTTTTAGGCAATGGTAAGAGTACTTGATGGCAATGCTGAGCTCTTCAGTATTTATCTTCAGTATTTGATATGGTGGGGTTTTGTTCAGGCCCTTCATTTCGTATTATTTCAGCATTTGGACGAAGGCTTAGACCTTCCCATTTTGATTGAATTAATAAGTTGAGTGTGAATAATTTCTGGTAAGTAGTCTTCCTTTTTCTGCAGAAGCCTGACTTGTAATAATATGGTGCCAGACTTTGTGGTTAATAAAGTT

Fln Alignment:

sp_v1.1_unigene14205___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP
A9NU89_______________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGLKTILSFTVPDQRSGKVELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRSENTFTIGTQHALDPLTTVKGRLNNYGKAAALLQHEWRPKSFVTLSGEVDTKALHNSAKVGLSLILKP

SNPs (tot: 99)

Position	A %	C %	G %	T %	Probability
71	88			11	0.923564
73	88		11		0.923564
74			11	88	0.923564
78		11	88		0.923564
79	11	88			0.923564
80		11		88	0.923564
81		11		88	0.923564
82		11	88		0.923564
83	11	88			0.923564
86			10	90	0.90298
87		90	10		0.90298
180	20			80	0.999996
182	80		20		0.999996
183	80		20		0.999996
185		80	20		0.999996
275	83	16			0.994512
279	14	14		71	0.984337
280			14	85	0.993533
282		85		14	0.993533
283		85		14	0.993533
284			71	28	1.0
285		14		85	0.993533
291			66	33	1.0
292	66	33			1.0
341	90		9		0.90298
913	95		4		0.994598
1014			19	80	1.0
1015	80	19			1.0
1017	18		81		1.0
1018	18		81		1.0
1021		76		23	1.0
1023		80	19		1.0
1024		80	19		1.0
1025			20	80	1.0
1027	80			20	1.0
1030	78	21			1.0
1031	78			21	1.0
1032		21		78	1.0
1034	78		21		1.0
1035			18	81	1.0
1036			81	18	1.0
1037			81	18	1.0
1038	81			18	1.0
1039	75			18	1.0
1041	18		81		1.0
1042	18		81		1.0
1043		81	18		1.0
1044	81	18			1.0
1045		18	81		1.0
1046		81		18	1.0
1049	18	81			1.0
1052			18	81	1.0
1054		81		18	1.0
1055	18			81	1.0
1057		81	18		1.0
1058	81	18			1.0
1059	18		81		1.0
1061	81			18	1.0
1062	18			81	1.0
1063			80	20	1.0
1064	75	6		18	1.0
1065			81	18	1.0
1066			18	81	1.0
1068			81	18	1.0
1070		21	78		1.0
1071	28		71		1.0
1072		78	21		1.0
1073	23	76			1.0
1075	66			33	1.0
1076	66		8	25	1.0
1080		25		75	1.0
1081			25	75	1.0
1082	25			75	1.0
1083	25	8		66	1.0
1085		8	25	66	1.0
1087	66	33			1.0
1088	75			25	1.0
1089			25	75	1.0
1090		75		25	1.0
1091			18	81	0.999994
1092		18		81	0.999994
1094	18	81			0.999994
1095	18			81	0.999994
1096	18		81		0.999994
1097			80	20	0.999996
1099			80	20	0.999996
1100	80			20	0.999996
1102	20		80		0.999996
1104			80	20	0.999996
1106	80		20		0.999996
1107	20	80			0.999996
1614	87			12	0.992554
1627	20			80	0.995493
1628			20	80	0.995493
1630			20	80	0.995493
1631	20			80	0.995493
1632		80	20		0.995493
1637		33	66		0.997452
1639	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain