SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14176

Length: 1715 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule associated protein xmap215, putative	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	microtubule organization protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	62%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	62%
Blast2go	microtubule binding	GO:0008017	Molecular Function	62%
Blast2go	microtubule	GO:0005874	Cellular Component	62%
Blast2go	preprophase band	GO:0009574	Cellular Component	62%
Blast2go	spindle	GO:0005819	Cellular Component	62%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	62%
Blast2go	phragmoplast	GO:0009524	Cellular Component	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAA6

Fln msg: your sequence is longer than subject: 312 - 60

Fln protein: MVPIDMEPQPIILAYIELNLQTLAAARMLNPAGAVGRSNWGDSTANGPNPAATHSVDAQLKQELAAIFKKIGDKQTCSVGLYELHRITQMYPQVDIFSQLQNASEAFRTYIRDGLAQIEKNSAAGRTPSSVPISTPPPVSSPSYTSPKLAPPSPLNERLQMVRVDQNNANLSSCQEDVDRTVSGVTHAGAFNQHDSRKLSHIRFLAGQYQSNSIPEGERTSIHSAPHGTLDAIRERMKSIQAATTGNSRSGSPTSYSNGSLPMAFSQANVSQATDLPNIEVSLQSVDVPPKDERTLSVLQARMERLKSGII*

Protein Length: 313

Fln nts: TGTATTGCATGAATTAGTTAAACTACGTGGAACTGCAATCAAAGGCCATCTCTCG_-_ATGGTTCCAATAGATATGGAACCACAGCCTATAATTCTTGCATACATTGAACTTAATCTCCAGACTTTGGCAGCAGCTAGAATGTTGAATCCTGCTGGAGCTGTTGGTCGTTCTAACTGGGGAGATTCAACTGCAAATGGTCCAAATCCTGCTGCGACGCATTCTGTAGATGCACAGTTGAAGCAAGAGCTAGCTGCAATTTTCAAAAAAATTGGAGACAAACAAACTTGCTCAGTTGGCTTATATGAACTCCATCGCATTACGCAGATGTATCCCCAGGTAGATATTTTCTCACAGCTCCAAAATGCAAGTGAAGCATTTCGGACATATATCAGAGATGGTTTAGCACAGATTGAGAAAAATTCTGCTGCTGGCAGAACACCCTCCAGTGTGCCTATATCAACACCACCTCCTGTGTCTTCTCCAAGCTATACTTCTCCAAAACTTGCCCCCCCTTCTCCTCTTAATGAGAGGTTGCAGATGGTCAGGGTGGATCAAAATAATGCTAACTTAAGCTCTTGTCAGGAGGATGTAGACAGAACTGTCAGTGGAGTTACTCATGCTGGAGCTTTCAATCAGCATGATTCAAGGAAGCTTTCTCACATACGATTCCTAGCTGGTCAATATCAAAGCAACAGTATCCCAGAAGGTGAAAGAACATCAATTCATTCTGCTCCACACGGCACATTGGATGCAATTAGAGAAAGAATGAAAAGTATACAGGCTGCTACTACCGGAAACTCTAGGAGTGGATCACCGACTTCATATTCAAATGGATCACTGCCTATGGCATTTTCTCAAGCCAATGTATCTCAAGCAACTGATCTTCCTAACATAGAGGTATCACTACAATCTGTGGATGTTCCTCCCAAGGACGAAAGAACGTTATCTGTTCTTCAAGCTCGAATGGAAAGGCTGAAAAGTGGTATTATTTAG___TTTCTGTCAATGTAAATTGTAGCACTATATCTTACTTTGGAGTTTAAAGTAAGATATCTCAGCCTGTTATTTCTTTATTGGAAACCGATCTGTTTGTATTACTCATAAAGAGACCTGATCATAATGGGAATCCCAGGCAGTTAGCAACTTGAAGCCATGGTCCTCATGGTGAAGGTAATTGGGTTGAATCATCAATAAGCGACATCATGTGCTGCTCTACAGAATATGCATGGTAGTCGGCCTAGAGATATTAAGCTGATTGTGCTTCTAAAGTACTTTCTTTCTAAAGTTGGGGAAGCTTTGAAGATCATATGTAAGCATACTGTTCTCCACAGGTCAAAGGCAACCCTTTTTTTTGTCAGCCGATTGAGTGCATATCTATTGCTATGTCAGGAAACCTCTATTGGTTTGTTTATGAAATCCTGCTTCTAGGCCTTTTTCATAATTCCCAGTTGTAATATGCTCAAGTTACAGAACCGTTCAAAGCATTACTTCAGCTCTTTTGAATGATGTCATTATCCTGCGGTTACTCCCTGTGCACGAGAGGGAAACTAGATGAAATTCAATGTAAAAGGCTATGCAAGTAATATTCTTTATTCAAGGAAAACTATCTCTGACATGATTTTATCTCTATTCTTGTACATTATCTATTTGACCTAAATTCTTTTGTCCAAGAAGAAATTATTCTTCGAGGCATTTCTCATTATAAACCTGTGTTTGAAGC

Fln Alignment:

sp_v1.1_unigene14176___SYSNGSLPMAFSQANVSQATDLPNIEVSLQSVDVPPKDERTLSVLQARMERLKSGII
D5AAA6_______________SYSNGSLP-AFSRNFVSQPAESLCPEMLPQSGGVPAMDEKALSGLQARVERLKCGVI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
930	75		25		0.996473
994	12		87		0.992554
996			14	85	0.993533
997			14	85	0.993533
998		87	12		0.992554
999			12	87	0.992554
1030	11			88	0.923564
1031	10			90	0.90298
1339	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain