SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14167

Length: 221 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene14167
CGTCGTGACCTTGGCTGTCACTCAATTCTGAAATATATGCGTTCCGTGTGTTTACTGATGCACAGCTTGGTTGCAGGTTTCATACACATCGTGGTTCCTTGATGCGTTCAATTATGCTATTGCAACTGGGATGAATGTGTTGAACTTGAGCATTGGGGGCCCTGATTACCTGGACCGCCCATTTGTGGAGAAGGTAAAGAGTCTTCTACTGGCATTGCAGG

Ace file of the UniGene sp_v1.1_unigene14167

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	88%
Blast2go	protein	-	-	7.48524e-18	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	7.48524e-18	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	7.48524e-18	91%
Blast2go	proteolysis	GO:0006508	Biological Process	7.48524e-18	91%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	7.48524e-18	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	7.48524e-18	91%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	7.48524e-18	91%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9FRN6

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 73 - 291

Fln protein: VVTLAVTQF*NICVPCVY*CTAWLQVSYTSWFLDAFNYAIATGMNVLNLSIGGPDYLDRPFVEKVKSLLLALQ

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTGAAATATATGCGTTCCGTGTGTTTACTGATGCACAGCTTGGTTGCAGGTTTCATACACATCGTGGTTCCTTGATGCGTTCAATTATGCTATTGCAACTGGGATGAATGTGTTGAACTTGAGCATTGGGGGCCCTGATTACCTGGACCGCCCATTTGTGGAGAAGGTAAAGAGTCTTCTACTGGCATTGCAGG

Fln Alignment:

sp_v1.1_unigene14167___QVSYTSWFLDAFNYAIATGMNVLNLSIGGPDYLDRPFVEKVK
B9FRN6_______________QISYTSWFLDAFNYAIATGMDVLNLSIGGPDYLDLPFVEKLR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
183	66		33		0.997452
215		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain