SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14153

Length: 555 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene14153
CGTCGTGACCTTGGCTGTCACTCATCTGTATCTATATTGCTGACAAAAGATGAGCTTGTGGCAGCACTACATGGATGTGTTGTTGCAATTTGTGACAAGGTCAAGCAATCGGCTGAAGGAACTGTTGAAGCTGTTATTGAATTTATTCTTAAAAGAGGCAGCGAGTTGAATGAAACAGATATTTCCAGGACAACCCAGTCATTACTTTCAGCCACAGTTGCTGTCAGTGATAAACAACTGCGTCAAGAAGTTCTTAGTGCAACTTGTTGCCTTGCTGAGAATACATCAGCAAAGGTTGTCTTTAGTGAATTGCTATCTGCAGCTGAGAGGGATGCCATGACAAAGGATATCACAAGGTTAAGAGGTGGCTGGCCTATACAGGATGCCTTTTATGCATTTTCCCAGCATGATGTTCTTTCAATTATGTTCCTGGACCACGTCATTTCTGTGCTTAATGAAGTGCCATCCCACAAAGAAGATTCGGAAAAGGGAGATAACACAGATCATATGACAATGCCATCGGTTGTCAGTGAAATGCCTCAAGCAGCTACTCTT

Ace file of the UniGene sp_v1.1_unigene14153 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	64%
Blast2go	uncharacterized protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HKD5

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 185 - 1921

Fln protein: RRDLGCHSSVSILLTKDELVAALHGCVVAICDKVKQSAEGTVEAVIEFILKRGSELNETDISRTTQSLLSATVAVSDKQLRQEVLSATCCLAENTSAKVVFSELLSAAERDAMTKDITRLRGGWPIQDAFYAFSQHDVLSIMFLDHVISVLNEVPSHKEDSEKGDNTDHMTMPSVVSEMPQAATL

Protein Length: 186

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTATCTATATTGCTGACAAAAGATGAGCTTGTGGCAGCACTACATGGATGTGTTGTTGCAATTTGTGACAAGGTCAAGCAATCGGCTGAAGGAACTGTTGAAGCTGTTATTGAATTTATTCTTAAAAGAGGCAGCGAGTTGAATGAAACAGATATTTCCAGGACAACCCAGTCATTACTTTCAGCCACAGTTGCTGTCAGTGATAAACAACTGCGTCAAGAAGTTCTTAGTGCAACTTGTTGCCTTGCTGAGAATACATCAGCAAAGGTTGTCTTTAGTGAATTGCTATCTGCAGCTGAGAGGGATGCCATGACAAAGGATATCACAAGGTTAAGAGGTGGCTGGCCTATACAGGATGCCTTTTATGCATTTTCCCAGCATGATGTTCTTTCAATTATGTTCCTGGACCACGTCATTTCTGTGCTTAATGAAGTGCCATCCCACAAAGAAGATTCGGAAAAGGGAGATAACACAGATCATATGACAATGCCATCGGTTGTCAGTGAAATGCCTCAAGCAGCTACTCTT

Fln Alignment:

sp_v1.1_unigene14153___SSVSILLTKDELVAALHGCVVAICDKVKQSAEGTVEAVIEFILKRGSELNETDISRTTQSLLSATVAVSDKQLRQEVLSATCCLAENTSAKVVFSELLSAAERDAMTKDITRLRGGWPIQDAFYAFSQHDVLSIMFLDHVISVLNEVPSHKEDSEKGDNTDHMTMPSVVSEMPQAA
F6HKD5_______________SSVCVLLTKDELVAALHYCTGAICDKIKQSAEGAIQAVTDFVMKRGHELNEMDVSRTTQSLLSAAAHVTEKYLRQETLAAISSLAENTSSKIVFNEVLTTAARDIVTKDISRLRGGWPMQDAFYAFSQHIVLSYMFLEHVISVLSQSPIVKDDPEKGDSSSHRVDSHIEDNILQAA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
361	25		75		0.996473
367	25	75			0.996473
369	25			75	0.996473
371		25	75		0.996473
372	75	25			0.996473
375			25	75	0.996473
376	75		25		0.996473
380		25		75	0.996473
382	25			75	0.996473
383		25		75	0.996473
384			25	75	0.996473
533			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain