SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14132

Length: 450 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene14132
GTCGCGTGCCCTGTGCTGAAAAGAGACGTACAGGAGTGTGGCATCCACGCGTTGCCCTGGCTGAGTGGTAACTTTCAAGGTGCGTGCGTGGATCAAAATTCCGTGCTGAACAGGGGAATTTACAGGAGGAATCGCCACTGGAGAAGGTTGACAGGATTCATTTGCTGTAAGGCCATTAAAGATCCGCATTAAATATCCATTAAAATCCCTGTAATACTGGTCGCGGTGTGCAGCGAATATGGAGGATATGGCAATAGCAAGCGAGGAGGGCGTCAGGCAGAGGCTCCTGAAGCCGCACGCCGAGAAGCATTTCATGGCGGGAGAGATGGTGAGGGATGTCATAATGGGAATGTCAGATGGCCTCACTGTTCCGTTTGCATTGGCAGCAGGGCTTTCCGGAGCCGATGTGTCTTCCTCCATTATTCTCACTGCCGGCCTTGCTGAAGTGGC

Ace file of the UniGene sp_v1.1_unigene14132

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VIT1; VIT1 (vacuolar iron transporter 1); iron ion transmembrane transporter	-	-	1.0e-17	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	vacuolar iron transporter	-	-	1.35311e-26	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular sequestering of iron ion	GO:0006880	Biological Process	1.35311e-26	87%
Blast2go	iron ion transmembrane transporter activity	GO:0005381	Molecular Function	1.35311e-26	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.35311e-26	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSK5

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 70 - 246

Fln protein: MEDMAIASEEGVRQRLLKPHAEKHFMAGEMVRDVIMGMSDGLTVPFALAAGLSGADVSSSIILTAGLAEV

Protein Length: 71

Fln nts: GTCGCGTGCCCTGTGCTGAAAAGAGACGTACAGGAGTGTGGCATCCACGCGTTGCCCTGGCTGAGTGGTAACTTTCAAGGTGCGTGCGTGGATCAAAATTCCGTGCTGAACAGGGGAATTTACAGGAGGAATCGCCACTGGAGAAGGTTGACAGGATTCATTTGCTGTAAGGCCATTAAAGATCCGCATTAAATATCCATTAAAATCCCTGTAATACTGGTCGCGGTGTGCAGCGAAT_-_ATGGAGGATATGGCAATAGCAAGCGAGGAGGGCGTCAGGCAGAGGCTCCTGAAGCCGCACGCCGAGAAGCATTTCATGGCGGGAGAGATGGTGAGGGATGTCATAATGGGAATGTCAGATGGCCTCACTGTTCCGTTTGCATTGGCAGCAGGGCTTTCCGGAGCCGATGTGTCTTCCTCCATTATTCTCACTGCCGGCCTTGCTGAAGTGGC

Fln Alignment:

sp_v1.1_unigene14132___MEDMAIASEEGVRQRLLKPHAEKHFMAGEMVRDVIMGMSDGLTVPFALAAGLSGADVSSSIILTAGLAEV
C0PSK5_______________MEEIAIGGKDGVRQRLLKPHAEKHFTAGEMVRDVIMGMSDGLTVPFALAAGLSGADASSSIILTAGLAEV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
373	33		66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain