SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14105

Length: 1033 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14105

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[Q] COG2124 Cytochrome P450	-	-	2.0e-14	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	6-deoxocastasterone oxidase	-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	heme binding	GO:0020037	Molecular Function	77%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	77%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P221

Fln msg: Distance to subject end: 203 aas, your sequence is shorter than subject: 267 - 432

Fln protein: MDILSTMALGFIFLCSIIALLRWNEVRYGKKGLPPGTMGWPLFGETPDFLRYGQQFIKNRKARYGDLFKTHILGCPTVISTDPAVNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQSDLHKTMRGAMLALINPSMIKGHLLSDINEFMDIHLQHWNDRVINLQDKTKEMALLLSLQQVMSIKSGPKAEAFVSEFCKLVEGTISMPINLPGTSYKRGFQARENILRMLREVLKERRASMDTYNDMIAMLLNDKEGESDGTSANCKL

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTCTGGGCTACGTCGTGACCTTGGCTGTCACTCATTTCTTTTCCAACGAACAATGATTAACAGGGCTGCTTTATATCACATATCTCAAATCGCCTGAGGTTGCACAGGATCCTATTAGAGAGGCAAGACTGAGGCCTAATTGTGGTATTTGAGGGGATTTGAAGGCCTGAAAATTCAAAAGGGCCAACGTGGGTACGAGGCCAGAG_-_ATGGATATTTTAAGCACAATGGCTTTGGGTTTCATTTTTCTCTGCAGTATAATCGCTTTGCTGCGCTGGAATGAAGTTAGATACGGCAAGAAAGGCCTTCCTCCAGGCACCATGGGATGGCCTCTCTTTGGAGAAACTCCTGATTTTCTCAGATATGGTCAACAATTTATCAAAAACAGAAAGGCCAGATATGGAGATTTGTTCAAGACTCACATTCTAGGATGCCCGACGGTGATATCGACGGATCCAGCTGTCAACAGATATATCTTATTGAATGAAGGCCGAGGACTAATTCCTGGATACCCGCAGTCTATGCTTGACATATTGGGAAAATGGAACATTGCTGCTGTTCAAAGCGATCTTCATAAAACCATGAGAGGAGCCATGCTCGCATTGATCAATCCCTCCATGATCAAAGGCCACCTGCTTTCTGATATCAACGAGTTCATGGACATACATCTGCAACATTGGAATGACCGCGTAATCAATCTGCAGGATAAAACTAAAGAGATGGCTTTGCTTTTGTCTTTACAGCAGGTAATGAGTATCAAGTCTGGTCCGAAGGCAGAGGCATTTGTGTCAGAATTCTGTAAACTCGTGGAAGGAACCATTTCCATGCCTATAAATCTTCCTGGTACCAGCTACAAACGTGGTTTCCAGGCAAGGGAAAATATCCTGAGAATGTTGAGAGAAGTGCTCAAGGAAAGGAGGGCTTCCATGGACACTTATAATGATATGATTGCAATGCTTCTTAATGACAAAGAAGGAGAATCAGATGGCACATCTGCTAATTGCAAGCTC

Fln Alignment:

sp_v1.1_unigene14105___MGWPLFGETPDFLRYGQQFIKNRKARYGDLFKTHILGCPTVISTDPAVNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQSDLHKTMRGAMLALINPSMIKGHLLSDINEFMDIHLQHWNDRVINLQDKTKEMALLLSLQQVMSIKSGPKAEAFVSEFCKLVEGTISMPINLPGTSYKRGFQARENILRMLREVLKERRASMDTYNDMIAMLLNDKEGESDGTSANCKL
A9P221_______________MGWPLFGETSDFLKSGQKFIKIRRARYGELFRSHILGCPTVISTDPALNRYILLNEGRGLIPGYPQSMLDILGKWNIAAVQNSLHKTMRGAMLALINPSMIKDHLLSDINNFMDIHFQHWNDRVINLQDKTKEMALLLSLKQVMSMNSGPKAEAFMLEFYKLVEGTISMPINLPGTSYRRGFQARENVLRMLREVLRERRASTDTHNDMIAMLLNDKE-EEDGASVNSKL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
125			80	20	0.995493
127			40	60	1.0
128			40	60	1.0
405		85	14		0.993533
407	80	20			0.995493
409	80		20		0.995493
410	80		20		0.995493
412	80	20			0.995493
474			80	20	0.995493
489		83		16	0.994512
536	85		14		0.993533
700		75		25	1.0
733	77		22		1.0
774	80	20			1.0
868	11		88		0.923564
1006			28	71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain