SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene14083

Length: 889 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene14083

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0497 membrane protein 2 n=1 Tax=Picea sitchensis RepID=U4972_PICSI	-	-	79%
FL-Next	sp=CASP-like protein 6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	salicylic acid-induced fragment 1 protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	72%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	72%
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
588	85		14		0.993533
591	85		14		0.993533
594	85	14			0.993533
595		14	85		0.993533
598			14	85	0.993533
602		14		85	0.993533
603	14		85		0.993533
736		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain