SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13989

Length: 2485 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13989
CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTCATCTTTTGCTTGGACGGCCTTCGTCGGTCCTACAGCATTATACCATTACAGGTAGATGCCATTCACCTTTATCTTTTGTATACACATTGTATATATCTCTCTGTAATGAATGGCATCAATGTCGATAGCTCTATGTTCTTTGCTTCTTAAAACAACTGGATTTATTCAATTTAGCCTACAAACCCTGAAGCAGATGAGTTATTGCTGGAAGGATATATTCATTGTGTACATTAATATTTGAGACAGAGGACCGTTAGGATCACCAATAATCTCTGAGTGCCACAAATTTCAAATCTTAGGGTATTGGAAGTTTCATCATCAGCTCTTGAATTTGCAATGAGGTCAACGAAGATGAAGCACATCGTGCAGCCCTGCATATTTGGTCACATTGTACCATCATACTCTCACAAAAAATCTCGAATGATGAAGTGGCTGAGCAAGCTTTTTAAAGGTTCAAGTCACAAAGTGTCAGATGGACACTACCCAGGTGCATTTGGAGATGATAATGTAATTTGGCATGTGCCCTCTAATTCCATGGATGGTCCATTACGGAATGAAGATGAGGAGCTGGATCATGCAATTGCACTTTCTCTTTCTGAAGAACTAACCAAACCAGATGCCTCAGGTAGCAGTTTACAAGAGCCTGAGGAGAATGATGAAGAACTTGCTCGAGCTCTTGAAGCAAGTTTGAAAATGGGTTCACAGCAAAATCCTCCCAGTCAGCCTCCATCATACTCTTACCCTAGAGGATACAGGATCTGTGCTGGTTGCNATCNTGANNTNGGCTNTNNGCNNNTTTTAAGTTGTATGGGGACCTTATGGCATCCAGATTGTTTTTGTTGTGTTGCATGTAGTCTACCCATACGTGAACACGAGTTTTCNATGTCAGGGAATGATCCATACCACAAATCCTGTTACAAGGAACTCCACCATCCAAAATGTGATGTTTGCCACCAGTTTATCCCTACAAATAGAGCTGGGTTGATTGAATACAGAGCCCATCCATTCTGGGGGCAGCGGTATTGTCCTTCACATGAACATGATGACACTCCTCGGTGCTGTAGTTGCGAGCGTATGGAGCCAAGAGATGTACAATATATTTCCTTGGATGATGGGCGTAAACTATGCCTGGAGTGCCTGGACTCATCAATAATGGATACAGGAGAATGTCAACCTCTTTACCATGAAATTAGGGACTATTACGAAGGCATGATTATGAAATTAGACCAGCAAATACCTATGTTGTTGGTTGAAAGACAAGCATTAAATGAAGCAATGGAGGGTGAAAAGGATGGACACCATCATATGCCAGAAACTCGAGGACTGTGCCTTTCAGAAGAACAAACAGTCAGCAGTATACTTAGAAGGCCAAAGATTGGAGCAGGAAATCGAATTACAGGCATGAGGACTGGGTCTCAGAAACTAACTCGGAGATGTGAAGTCACAGCCATTCTCATCCTTTATGGCCTTCCTAGATTACTAACAGGATCTATTCTTGCCCATGAGTTGATGCATGGATGGCTGCGCCTGAATGGCTTTCGTAATCTCAGCCCTGAGGTTGAGGAGGGAATCTGTCAAGTGCTTTCTCATATGTGGCTAGAGTCAGAGGTCATGGCAGGATCAAGCAGCAATGTAGCTTCAACATCAACGGGAGCTTCTTCCTCTTCATCAAAAAAGGCAAATAGGTCTCAATTTGAAAAGAAACTTGGGGAGTTCTTCATGCACCAGATTTCAGCGGACACATCACCAGCATATGGAGAAGGTTTTAGATTGGGTAATGCAGCTGTAGTTCAGTATGGTCTACGCCGAACATTGGATCACATTCGTTTGACAGGAAACTATCCTCTATAAGTTCTGAGGCATGTAAAGATGGTGTAACTTAGAAGGAGATGATATTCATCATCTCCATGTTTGCATTCAGTGGGCAAAAGTTTCCACCCTATTCGATGTATCTTATCAAATAATTTTGAACATTGATTGCAAGTATTCAAAGCGTACTTGTATCAGCAATTCAAGATTACTCTGGAAATCATATTCAAGACAATTTGCTATGTCAAAATATATTTACCATGATTTAAGATGCAAAAGGCGCTTAAAGAGAATTCGGAGTGATACAAGCATCAAAGCATATTCTGCCAGCAGTGTATCAAAATCCTGTATGTAATTCAGTTTTTTCAACAAGAATAAATTCTCAGACTGCCAAAGTTTCAGGTGTCACGGAGTCCGTTTTGATCCTATGGAGATATGGTTCTCAATGATATATACAGTAATCTCAGATCATTTGAAATATAAGTGAAATGTATAGCTGCNACGCAAACTGGACGTTNTTCTCTATGGATTTATTATTAGTTCACTGTCTCAGTGAAATTATTAATATTGAAGTAAATTAGTATCAAAAAGTGTTGAATATACGTGTTCAGTGTTGAAGTTATCCAGGTTGAGCACTTGAGTC

Ace file of the UniGene sp_v1.1_unigene13989

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to zinc ion binding	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	zinc ion binding	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, LIM-type	IPR001781	-	74%
Blast2go	Ubiquitin interacting motif	IPR003903	-	74%
Blast2go	Protein of unknown function DUF3633	IPR022087	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR15

Fln msg:

Fln protein: MRSTKMKHIVQPCIFGHIVPSYSHKKSRMMKWLSKLFKGSSHKVSDGHYPGAFGDDNVIWHVPSNSMDGPLRNEDEELDHAIALSLSEELTKPDASGSSLQEPEENDEELARALEASLKMGSQQNPPSQPPSYSYPRGYRICAGCNPDVGSWHFLSCMGTLWHPDCFCCVACSLPIREHEFSMSGNDPYHKSCYKELHHPKCDVCHQFIPTNRAGLIEYRAHPFWGQRYCPSHEHDDTPRCCSCERMEPRDVQYISLDDGRKLCLECLDSSIMDTGECQPLYHEIRDYYEGMIMKLDQQIPMLLVERQALNEAMEGEKDGHHHMPETRGLCLSEEQTVSSILRRPKIGAGNRITGMRTGSQKLTRRCEVTAILILYGLPRLLTGSILAHELMHGWLRLNGFRNLSPEVEEGICQVLSHMWLESEVMAGSSSNVASTSTGASSSSSKKANRSQFEKKLGEFFMHQISADTSPAYGEGFRLGNAAVVQYGLRRTLDHIRLTGNYPL*

Protein Length: 506

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTCATCTTTTGCTTGGACGGCCTTCGTCGGTCCTACAGCATTATACCATTACAGGTAGATGCCATTCACCTTTATCTTTTGTATACACATTGTATATATCTCTCTGTAATGAATGGCATCAATGTCGATAGCTCTATGTTCTTTGCTTCTTAAAACAACTGGATTTATTCAATTTAGCCTACAAACCCTGAAGCAGATGAGTTATTGCTGGAAGGATATATTCATTGTGTACATTAATATTTGAGACAGAGGACCGTTAGGATCACCAATAATCTCTGAGTGCCACAAATTTCAAATCTTAGGGTATTGGAAGTTTCATCATCAGCTCTTGAATTTGCA_-_ATGAGGTCAACGAAGATGAAGCACATCGTGCAGCCCTGCATATTTGGTCACATTGTACCATCATACTCTCACAAAAAATCTCGAATGATGAAGTGGCTGAGCAAGCTTTTTAAAGGTTCAAGTCACAAAGTGTCAGATGGACACTACCCAGGTGCATTTGGAGATGATAATGTAATTTGGCATGTGCCCTCTAATTCCATGGATGGTCCATTACGGAATGAAGATGAGGAGCTGGATCATGCAATTGCACTTTCTCTTTCTGAAGAACTAACCAAACCAGATGCCTCAGGTAGCAGTTTACAAGAGCCTGAGGAGAATGATGAAGAACTTGCTCGAGCTCTTGAAGCAAGTTTGAAAATGGGTTCACAGCAAAATCCTCCCAGTCAGCCTCCATCATACTCTTACCCTAGAGGATACAGGATCTGTGCTGGTTGCaATCcTGAtgTaGGCTcTtgGCactTTTTAAGTTGTATGGGGACCTTATGGCATCCAGATTGTTTTTGTTGTGTTGCATGTAGTCTACCCATACGTGAACACGAGTTTTCgATGTCAGGGAATGATCCATACCACAAATCCTGTTACAAGGAACTCCACCATCCAAAATGTGATGTTTGCCACCAGTTTATCCCTACAAATAGAGCTGGGTTGATTGAATACAGAGCCCATCCATTCTGGGGGCAGCGGTATTGTCCTTCACATGAACATGATGACACTCCTCGGTGCTGTAGTTGCGAGCGTATGGAGCCAAGAGATGTACAATATATTTCCTTGGATGATGGGCGTAAACTATGCCTGGAGTGCCTGGACTCATCAATAATGGATACAGGAGAATGTCAACCTCTTTACCATGAAATTAGGGACTATTACGAAGGCATGATTATGAAATTAGACCAGCAAATACCTATGTTGTTGGTTGAAAGACAAGCATTAAATGAAGCAATGGAGGGTGAAAAGGATGGACACCATCATATGCCAGAAACTCGAGGACTGTGCCTTTCAGAAGAACAAACAGTCAGCAGTATACTTAGAAGGCCAAAGATTGGAGCAGGAAATCGAATTACAGGCATGAGGACTGGGTCTCAGAAACTAACTCGGAGATGTGAAGTCACAGCCATTCTCATCCTTTATGGCCTTCCTAGATTACTAACAGGATCTATTCTTGCCCATGAGTTGATGCATGGATGGCTGCGCCTGAATGGCTTTCGTAATCTCAGCCCTGAGGTTGAGGAGGGAATCTGTCAAGTGCTTTCTCATATGTGGCTAGAGTCAGAGGTCATGGCAGGATCAAGCAGCAATGTAGCTTCAACATCAACGGGAGCTTCTTCCTCTTCATCAAAAAAGGCAAATAGGTCTCAATTTGAAAAGAAACTTGGGGAGTTCTTCATGCACCAGATTTCAGCGGACACATCACCAGCATATGGAGAAGGTTTTAGATTGGGTAATGCAGCTGTAGTTCAGTATGGTCTACGCCGAACATTGGATCACATTCGTTTGACAGGAAACTATCCTCTATAA___GTTCTGAGGCATGTAAAGATGGTGTAACTTAGAAGGAGATGATATTCATCATCTCCATGTTTGCATTCAGTGGGCAAAAGTTTCCACCCTATTCGATGTATCTTATCAAATAATTTTGAACATTGATTGCAAGTATTCAAAGCGTACTTGTATCAGCAATTCAAGATTACTCTGGAAATCATATTCAAGACAATTTGCTATGTCAAAATATATTTACCATGATTTAAGATGCAAAAGGCGCTTAAAGAGAATTCGGAGTGATACAAGCATCAAAGCATATTCTGCCAGCAGTGTATCAAAATCCTGTATGTAATTCAGTTTTTTCAACAAGAATAAATTCTCAGACTGCCAAAGTTTCAGGTGTCACGGAGTCCGTTTTGATCCTATGGAGATATGGTTCTCAATGATATATACAGTAATCTCAGATCATTTGAAATATAAGTGAAATGTATAGCTGCaACGCAAACTGGACGTTcTTCTCTATGGATTTATTATTAGTTCACTGTCTCAGTGAAATTATTAATATTGAAGTAAATTAGTATCAAAAAGTGTTGAATATACGTGTTCAGTGTTGAAGTTATCCAGGTTGAGCACTTGAGTC

Fln Alignment:

sp_v1.1_unigene13989___MKWLSKLFKGSSHKVSDGHYPGAFGDDNVIWHVPSNSMDGPLRNEDEELDHAIALSLSEELTKPDASGSSLQEPEENDEELARALEASLKMGXXXXXXXXXXXXXXXR---GYRICAGCNPDVGSWHFLSCMGTLWHPDCFCCVACSLPIREHEFSMSGNDPYHKSCYKELHHPKCDVCHQFIPTNRAGLIEYRAHPFWGQRYCPSHEHDDTPRCCSCERMEPRDVQYISLDDGRKLCLECLDSSIMDTGECQPLYHEIRDYYEGMIMKLDQQIPMLLVERQALNEAMEGEKDGHHHMPETRGLCLSEEQTVSSILRRPKIGAGNRITGMRTGSQKLTRRCEVTAILILYGLPRLLTGSILAHELMHGWLRLNGFRNLSPEVEEGICQVLSHMWLESEVM---XXXXXXXXXXXXXXXXXXXXXXXXXQFEKKLGEFFMHQISADTSPAYGEGFRLGNAAVVQYGLRRTLDHIRLTGNYP
B8LR15_______________MRWLDKIFKGSNHRISEGQYQGVFADENSVWDMPSGSLDGHAHSGNEDLDHAIALSLSEEEQRK-ANNIGGSSEVDDDEELARALQASLDIGSPPRSNQSSIYPSTHAYPTGYKICAGCNTEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKELYHPKCDVCSHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYLEIRDFYEGMNMKINQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSSISRRPRIG-GNRIIDMFTESKKLTRRCEVTAILILYGLPRLLTGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAGSGSSSHGASTSSGISSSSSSKKGAKSQFEKKLGDFFMHQITMDSSPAYGDGFRAGNAAMLRYGLKRTLDHIRLTGNFP

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
812	66		33		0.997452
816	66		33		0.997452
820		33	66		0.997452
821	66	33			0.997452
823	66			33	0.997452
828	66		33		0.997452
830		33	66		0.997452
831	33		66		0.997452
834			66	33	0.997452
835		33	66		0.997452
836	33			66	0.997452
922	33	66			0.997452
1339	75			25	0.996473
1345	75	25			0.996473
1481	88			11	0.923564
1487	88			11	0.923564
1488		11	88		0.923564
1489	11	88			0.923564
1596	12		87		0.992554
1615			87	12	0.992554
1623		87		12	0.992554
1666	14		85		0.993533
1683	85		14		0.993533
1685	85		14		0.993533
1690		85		14	0.993533
1693	14		85		0.993533
1720	20	80			0.995493
2033	87	12			0.992554
2044	87		12		0.992554
2048			87	12	0.992554
2085	90		10		0.90298
2089			90	10	0.90298
2142	80			20	0.999996
2199		10		90	0.90298
2268		16		83	0.994512
2288			83	16	0.994512
2351	66		33		1.0
2368		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain