SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene13987

Length: 2057 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene13987
TACATGGGGGAAATAAATCAGACAGGCTGTTTGGCTGGGACCATTTTAGGAATCAAAATGACCTCACATGAACACAGCGCGGAAATGGCCGACATTACAGCGTTGGAGTTTCACGCTCCGCAACCAAGCAGCTTTATCATTTGCAAGCGCGGATCTTAGCCCCCGAGGAGCCGAGAGGTCCGAGTATCCGTCCATTTTATCCTGCCCTTATCGTTTATCCAGCGGCGCGATATGAAATTGTCGCCATAAGAGGTCGAAAGTCGAGTGTCAAATTTTCAGATCGAGTTGTAATTTTCCCGGCAAATCTTCCCCGATCAAATATATGGCGACTCTTCTTTCCTATTGTGTCAAAAATTTTCGAGAAAATATACTGCAGAGGACTCCAATTCTGGAAGTTACAGCGTTTCAGAGATAGACTTAGCACATTGGCGCTTCTTTGGCCGAGGATTTATCTGGATTCTCGGATTCTGACTTAAGATCAGCAGTTCGAGAATACATGGAAAATCCTTTGTTTTAGCCCCGAAGCCCAGTGACCATTTGCAACTATATTTACCACAGGAGAGGCCTGGAGCAATCCGATCGATAACCAGGCTAAGGCTTCCAAGTAAGGTTGGCAGTTTTCAGAAAAATCGAGTATTGAAACGCTCACTGGGAAATGAAGAGTTTGAAACCCTTATCCACAATGACTTCGACTTGAAACCAGTATGAACTTGGACACGGATATTCTGCCGGTGATTTTCAGCTATGCAAAGAATAAGCGCTCCTGGCGAGTCAACAATGGCGGCCGATTTACCTGCTTCCACGTCAGCTCTCAGCAACCGTTATGAGCCTGGTGAATCCTCACAGAGCCTTCTGAGCAGACGAGGTTCAAGCCTCTATAATTCGAGCCGGTTTCTTCAAGTGGATGACACCGGAGTTTATTTAACGTCCTTAGCTATCACTATCTTGATTACAGCAACAGTCACCATTTTAATTTTGTTATTCACGCTTATTATTACATTAGCTATACTATTGGCATCTTGTCAAAGCAAGCCTGATGTTGTGGTCAAGCAAGGGTCAAGAGCATTGGATAGAGTTGATGTGTGCAGGAGCTTTGCACTGAACTTTGAGCTTAATAACTTGCGGGGGAACGTTGTGTTTCCCAATACATGTGAAGAGTATATTTTTCATTACATGAGAAGTGGTCAATATGAGAACGATGTTAAGGAAACAGTCAGGGCAGCAGAGAGTTATTGGAGTTCAGTAATACCTAACGTTGATGGATTCGATGCAGTGGTAATGGAAATAGACGAAACTGCTCTGTCTAACGTGCCCTACTATAATTCTTTTCAGCTCCGTTCTCAGCTACACAATGAGAGTGCCTGGAATCACTGGATTGAACAAGCAAAAGCTCCAGCACTGACTGACACTTTGAAGCTGTATCAGAAACTCCAGACCAGTGGTTTGGCGTTGATTTTTCTTACTAGAAGGCATGAGAATCAGCGGAGCTCAACTGTGAAAAATCTCCTCCTAGCAGGTTATTCTGGTTGGAAAATGTTAATAATGAGGCCTGAAGATGACTTGCAGACGGATGTTCAAACTTTTAAGTCCAAACAGAGGTTATACCTGGAGAGTCTAGGTTTTCGTATTCAAGGTGCTATTGGTGATCAGTGGAGTGACATCAGTGGCCCTGCTGTTGGAAATTTCACTTTTAAGATGCCAAATCCATTGTATCATATCATTTAATTTTGTCTCGAGAACAAGAGAAAGTAATTCTATTGTCTACAAAGAAACGTAGAGATTTCTTTATGCTGCTTCTTTTATGGGAACTCTTGTTTTATGTTGTCTGGTTTAGAGAAGTCATAGTCAATTGACAGATTTTTTCTTAAAATCTGCCTATTTTGGTTAATAGCTGTATATCCTATTATCAGATTCCCAGGACTTTCTTTACAAAGGTTTATGGGAGAAAGGGCTATTGATGCTACTGTTGGAGTCAAGTGATAAGGATTTAGTTCTGAAAATATGTATTGGGATTTTATTATTAATAAAGAGATGTATTTTGTGTTTAGTTTCATGCC

Ace file of the UniGene sp_v1.1_unigene13987

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acid phosphatase 1 precursor, putative (EC:3.1.3.2)	-	-	1.99965e-42	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P5

Fln msg: your sequence is longer than subject: 327 - 148

Fln protein: MQRISAPGESTMAADLPASTSALSNRYEPGESSQSLLSRRGSSLYNSSRFLQVDDTGVYLTSLAITILITATVTILILLFTLIITLAILLASCQSKPDVVVKQGSRALDRVDVCRSFALNFELNNLRGNVVFPNTCEEYIFHYMRSGQYENDVKETVRAAESYWSSVIPNVDGFDAVVMEIDETALSNVPYYNSFQLRSQLHNESAWNHWIEQAKAPALTDTLKLYQKLQTSGLALIFLTRRHENQRSSTVKNLLLAGYSGWKMLIMRPEDDLQTDVQTFKSKQRLYLESLGFRIQGAIGDQWSDISGPAVGNFTFKMPNPLYHII*

Protein Length: 328

Fln nts: TACATGGGGGAAATAAATCAGACAGGCTGTTTGGCTGGGACCATTTTAGGAATCAAAATGACCTCACATGAACACAGCGCGGAAATGGCCGACATTACAGCGTTGGAGTTTCACGCTCCGCAACCAAGCAGCTTTATCATTTGCAAGCGCGGATCTTAGCCCCCGAGGAGCCGAGAGGTCCGAGTATCCGTCCATTTTATCCTGCCCTTATCGTTTATCCAGCGGCGCGATATGAAATTGTCGCCATAAGAGGTCGAAAGTCGAGTGTCAAATTTTCAGATCGAGTTGTAATTTTCCCGGCAAATCTTCCCCGATCAAATATATGGCGACTCTTCTTTCCTATTGTGTCAAAAATTTTCGAGAAAATATACTGCAGAGGACTCCAATTCTGGAAGTTACAGCGTTTCAGAGATAGACTTAGCACATTGGCGCTTCTTTGGCCGAGGATTTATCTGGATTCTCGGATTCTGACTTAAGATCAGCAGTTCGAGAATACATGGAAAATCCTTTGTTTTAGCCCCGAAGCCCAGTGACCATTTGCAACTATATTTACCACAGGAGAGGCCTGGAGCAATCCGATCGATAACCAGGCTAAGGCTTCCAAGTAAGGTTGGCAGTTTTCAGAAAAATCGAGTATTGAAACGCTCACTGGGAAATGAAGAGTTTGAAACCCTTATCCACAATGACTTCGACTTGAAACCAGTATGAACTTGGACACGGATATTCTGCCGGTGATTTTCAGCT_-_ATGCAAAGAATAAGCGCTCCTGGCGAGTCAACAATGGCGGCCGATTTACCTGCTTCCACGTCAGCTCTCAGCAACCGTTATGAGCCTGGTGAATCCTCACAGAGCCTTCTGAGCAGACGAGGTTCAAGCCTCTATAATTCGAGCCGGTTTCTTCAAGTGGATGACACCGGAGTTTATTTAACGTCCTTAGCTATCACTATCTTGATTACAGCAACAGTCACCATTTTAATTTTGTTATTCACGCTTATTATTACATTAGCTATACTATTGGCATCTTGTCAAAGCAAGCCTGATGTTGTGGTCAAGCAAGGGTCAAGAGCATTGGATAGAGTTGATGTGTGCAGGAGCTTTGCACTGAACTTTGAGCTTAATAACTTGCGGGGGAACGTTGTGTTTCCCAATACATGTGAAGAGTATATTTTTCATTACATGAGAAGTGGTCAATATGAGAACGATGTTAAGGAAACAGTCAGGGCAGCAGAGAGTTATTGGAGTTCAGTAATACCTAACGTTGATGGATTCGATGCAGTGGTAATGGAAATAGACGAAACTGCTCTGTCTAACGTGCCCTACTATAATTCTTTTCAGCTCCGTTCTCAGCTACACAATGAGAGTGCCTGGAATCACTGGATTGAACAAGCAAAAGCTCCAGCACTGACTGACACTTTGAAGCTGTATCAGAAACTCCAGACCAGTGGTTTGGCGTTGATTTTTCTTACTAGAAGGCATGAGAATCAGCGGAGCTCAACTGTGAAAAATCTCCTCCTAGCAGGTTATTCTGGTTGGAAAATGTTAATAATGAGGCCTGAAGATGACTTGCAGACGGATGTTCAAACTTTTAAGTCCAAACAGAGGTTATACCTGGAGAGTCTAGGTTTTCGTATTCAAGGTGCTATTGGTGATCAGTGGAGTGACATCAGTGGCCCTGCTGTTGGAAATTTCACTTTTAAGATGCCAAATCCATTGTATCATATCATTTAA___TTTTGTCTCGAGAACAAGAGAAAGTAATTCTATTGTCTACAAAGAAACGTAGAGATTTCTTTATGCTGCTTCTTTTATGGGAACTCTTGTTTTATGTTGTCTGGTTTAGAGAAGTCATAGTCAATTGACAGATTTTTTCTTAAAATCTGCCTATTTTGGTTAATAGCTGTATATCCTATTATCAGATTCCCAGGACTTTCTTTACAAAGGTTTATGGGAGAAAGGGCTATTGATGCTACTGTTGGAGTCAAGTGATAAGGATTTAGTTCTGAAAATATGTATTGGGATTTTATTATTAATAAAGAGATGTATTTTGTGTTTAGTTTCATGCC

Fln Alignment:

sp_v1.1_unigene13987___MEIDETALSNVPYYNSFQLRSQLHNESAWNHWIEQAKAPALTDTLKLYQKLQTSGLALIFLTRRHENQRSSTVKNLLLAGYSGWKMLIMRPEDDLQTDVQTFKSKQRLYLESLGFRIQGAIGDQWSDISGPAVGNFTFKMPNPLYHII
D5A8P5_______________MEIDETALSNVPYYNSFQLRSQLHNETAWNHWIEQAKAPALTDTLKLYQKLQTSGLALIFLTRRHENQQSSTVKNLLLAGYSGWKMLIMRSEDELQMDIQTFKSKQRLDLESLGFRIKGVIGDQWSDISGPAVGNHTFKMPNPLYHIL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
207		75		25	0.996473
213		25		75	0.996473
243		75		25	0.996473
405			80	20	0.995493
419	20	80			0.995493
474		85		14	0.993533
475			14	85	0.993533
476			14	85	0.993533
477	85		14		0.993533
532		11	88		0.923564
537	11	88			0.923564
627	77		11		0.968132
646	10		90		0.90298
767		10		90	0.90298
771	10		90		0.90298
791	11			88	0.923564
873	87		12		0.992554
1963		95		4	0.996599
1977	90			9	1.0
2040		13		86	1.0
2042			5	83	0.999887
2043		5	83		0.999887
2048	28		7	64	1.0
2049			10	60	1.0
2053			25	75	0.996473
2054	25		50	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain